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Report for CCDS25308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25308.1 Public Mus musculus 11 Pnpo 23 108 98 CCDS HistoryNCBI Gene:103711Re-query CCDS DB by CCDS ID:25308.1Re-query CCDS DB by GeneID:103711See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018803.11 ENSMUSP00000018803.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018803.11Link to Ensembl Protein Viewer:ENSMUSP00000018803.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000018803Re-query CCDS DB by Protein ID:ENSMUSP00000018803
Original member Current member NCBI NM_134021.2 NP_598782.1 Accepted alive Link to Nucleotide Sequence:NM_134021.2Link to Protein Sequence:NP_598782.1Re-query CCDS DB by Nucleotide ID:NM_134021Re-query CCDS DB by Protein ID:NP_598782Link to BLAST:NP_598782.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598782.1 261 Q91XF0 261 100% 0 0

Chromosomal Locations for CCDS 25308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96938915 96939083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96939255 96939325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96939648 96939776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96940016 96940069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96940856 96940955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96942410 96942534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96943731 96943868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGACGTGCGGGCTGCTGAGCGTCACTGTGACGTTCAGGAGACCTGCGAAGTGGACGGGCTACCTCCGTC
ACCTGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAATGCGCAAGAGTTACCGCGGGGATCGAGAGGC
ATTCGAGGAGACTCATCTGACCTCTCTGGATCCCATGAAGCAGTTTGCTTCCTGGTTTGACGAGGCTGTT
CAGTGTCCGGACATAGGAGAAGCCAATGCTATGTGTGTGGCTACCTGCACCAGAGACGGAAAACCCTCTG
CCCGGATGCTGCTGCTGAAGGGCTTTGGCAAAGACGGCTTCCGCTTCTTCACTAACTACGAGAGCCGGAA
GGGAAAAGAGCTGGATTCTAATCCCTTTGCCTCTCTTGTCTTCTACTGGGAGCCCCTGAACCGTCAGGTG
CGTGTGGAAGGCCCTGTGAAGAAACTCCCAGAGAAGGAGGCCGAGAACTACTTCCATTCCCGCCCCAAGA
GCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGTACCTGAGAAAGAA
AAATGAGGAACTGGGGCAGCTCTACCAGGACCAAGAGGTACCCAAGCCAGAATACTGGGGTGGCTACATC
CTGTACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCC
GAGGCCTGGCAACAGGAGACTCCCCTTTGGGACCCATGACCCACCACGGGGAGGAAGACTGGGTGTATGA
GAGACTTGCACCTTAA

Translation (261 aa):
MTCGLLSVTVTFRRPAKWTGYLRHLCCRGAVMDLGPMRKSYRGDREAFEETHLTSLDPMKQFASWFDEAV
QCPDIGEANAMCVATCTRDGKPSARMLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQV
RVEGPVKKLPEKEAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYQDQEVPKPEYWGGYI
LYPQVMEFWQGQTNRLHDRIVFRRGLATGDSPLGPMTHHGEEDWVYERLAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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