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Report for CCDS25291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25291.1 Public Mus musculus 11 Hoxb13 23 108 98 CCDS HistoryNCBI Gene:15408Re-query CCDS DB by CCDS ID:25291.1Re-query CCDS DB by GeneID:15408See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062709.3 ENSMUSP00000056315.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062709.3Link to Ensembl Protein Viewer:ENSMUSP00000056315.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000062709Re-query CCDS DB by Protein ID:ENSMUSP00000056315
Original member Current member NCBI NM_008267.4 NP_032293.1 Accepted alive Link to Nucleotide Sequence:NM_008267.4Link to Protein Sequence:NP_032293.1Re-query CCDS DB by Nucleotide ID:NM_008267Re-query CCDS DB by Protein ID:NP_032293Link to BLAST:NP_032293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032293.1 286 P70321 286 100% 0 0

Chromosomal Locations for CCDS 25291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96194443 96195046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96195973 96196229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGAGCCCGGCAATTATGCCACCTTGGACGGGGCCAAGGATATCGAAGGCTTGCTGGGAGCTGGAGGGG
GTCGGAATCTAGTCTCCCACTCCTCCCCACTGGCTAGCCATCCCGCGGCTCCAACGCTGATGCCAACTGT
CAACTATGCCCCCCTGGATCTGCCAGGCTCTGCAGAGCCACCAAAGCAGTGCCACCCTTGTCCTGGGGTG
CCTCAGGGGGCATCTCCAGCTCCTGTGCCTTATGGCTACTTTGGAGGCGGGTACTACTCTTGCCGAGTAT
CCAGGAGCTCCCTGAAACCCTGTGCCCAGACGGCCGCCCTGGCTACCTACCCTTCGGAAACTCCTGCACC
TGGGGAGGAGTATCCCAGCCGTCCCACCGAGTTTGCCTTCTATCCGGGCTACCCGGGACCATACCAGCCT
ATGGCCAGTTACCTGGATGTGTCTGTGGTGCAGACCCTGGGAGCCCCCGGAGAGCCTCGCCACGATTCTC
TGCTTCCCGTGGACAGTTACCAGCCCTGGGCCCTGGCCGGTGGCTGGAACAGCCAGATGTGTTGCCAAGG
TGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCC
GACGGCTGTGCCTTCCGCCGAGGCCGCAAAAAACGCATTCCCTATAGCAAGGGGCAGTTGCGGGAGTTGG
AGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTCGGCAGCCACCAGCCT
CTCTGAACGCCAGATTACCATCTGGTTTCAGAACCGCCGGGTCAAGGAGAAGAAGGTTCTTGCCAAGGTC
AAGACCAGCACTACCCCGTGA

Translation (286 aa):
MEPGNYATLDGAKDIEGLLGAGGGRNLVSHSSPLASHPAAPTLMPTVNYAPLDLPGSAEPPKQCHPCPGV
PQGASPAPVPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSETPAPGEEYPSRPTEFAFYPGYPGPYQP
MASYLDVSVVQTLGAPGEPRHDSLLPVDSYQPWALAGGWNSQMCCQGEQNPPGPFWKAAFAEPSVQHPPP
DGCAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKV
KTSTTP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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