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Report for CCDS25234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25234.1 Public Mus musculus 11 Dgke 23 108 98 CCDS HistoryNCBI Gene:56077Re-query CCDS DB by CCDS ID:25234.1Re-query CCDS DB by GeneID:56077See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000285.8 ENSMUSP00000000285.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000285.8Link to Ensembl Protein Viewer:ENSMUSP00000000285.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000285Re-query CCDS DB by Protein ID:ENSMUSP00000000285
Original member Current member EBI ENSMUST00000107894.7 ENSMUSP00000103526.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107894.7Link to Ensembl Protein Viewer:ENSMUSP00000103526.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107894Re-query CCDS DB by Protein ID:ENSMUSP00000103526
Original member Current member NCBI NM_019505.4 NP_062378.1 Accepted alive Link to Nucleotide Sequence:NM_019505.4Link to Protein Sequence:NP_062378.1Re-query CCDS DB by Nucleotide ID:NM_019505Re-query CCDS DB by Protein ID:NP_062378Link to BLAST:NP_062378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062378.1 564 Q9R1C6 564 100% 0 0

Chromosomal Locations for CCDS 25234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 89040732 89040911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89041448 89041559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89042162 89042289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89044240 89044311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89048889 89049002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89049849 89049900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89050319 89050476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89050669 89050812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89052427 89052546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89055358 89055517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89059931 89060385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGAGGGGGACCAGCGGTCCGGCCCACCCGCCCAGAGCCTGCTCCCTGATGGCCACTTGGTCCTATGGA
CGCTGTGCTCCGTGCTGTTGCCGGTGTTCATCACTTTATGGTGTAGCCTGCAGCGGTCGCGCCGGCAGCT
GCACCGCAGGGATATCTTCCGCAAGAGCAAGCATTGCTGGCGTGACACCGACCTGTTCAGCCACCCCACC
TACTGCTGCGTGTGCGCGCAGCACATCCTGCAAGGAGCCTTCTGCGACTGCTGTGGGCTCCGCGTGGACG
AGGGCTGCCTCAAGAAGGTCGACAAGCGCTTCCCGTGCAAGGAGATCATGCTCAAGAACGACAAGGCCGC
AGATGCCATGCCCCACCACTGGATCCGCGGCAACGTGCCCCTGTGCTCTTACTGTGTATTCTGCAGGCAG
CAGTGTGGCAGCCAGCCTAAACTGTGCGATTACAGGTGCATTTGGTGCCAGAAGACAGTCCACGACGAGT
GCATGCGAGGCAGCTTAAGGAGCGAAAAGTGTGACTTTGGAGAATTCAGAAACCTCATCATCCCGCCAAG
CTACTTAACTTCTATTAACCAGATGCGTAAAGACAAAAACACAAATTATGAAGGGCTTGCTTCTAAGTTT
GGAAAGCAATGGACCCCATTAATAATCCTAGCCAACTCTCGTAGTGGAACTAACATGGGAGAAGGTCTGT
TGGGAGAGTTTAAGATCCTGTTAAATCCAGTCCAGGTGTTTGATGTAACTAAAACTCCCCCGATCAAAGC
TCTGCAGCTGTGCACTCTTCTTCCTTATTACTCAGTTCGAGTCCTTGTTTGTGGAGGGGACGGGACTGTG
GGCTGGGTCCTCGATGCCATTGATGAAATGAAGATTAAGGGACAAGAAAAATACATTCCAGAGGTTGCGG
TCTTACCTCTGGGAACAGGTAATGATCTGTCCAATACCCTGGGTTGGGGTACAGGCTATGCTGGAGAAAT
TCCGGTTGCACAGGTCTTAAGAAATGTAATGGAAGCAGATGGAATCAAACTAGACAGATGGAAAGTTCAG
GTAACAAATAAAGGATACTACAATTTAAGAAAACCCAAGGAGTTCACAATGAACAACTACTTCTCTGTTG
GACCTGATGCCCTCATGGCTCTCAATTTTCACGCTCATCGTGAGAAGGCACCATCTCTGTTTTCCAGCCG
AATCCTTAACAAGGCTGTTTATTTATTCTATGGAACTAAAGATTGTTTAGTGCAAGAATGTAAAGATTTG
AATAAAAAAATTGAGCTAGAACTGGATGGTGAGCGAGTTGAGCTGCCTAACTTGGAGGGCATAATTGTTC
TGAACATTGGATACTGGGGCGGTGGCTGCAGACTGTGGGAAGGAATGGGAGATGAGACTTACCCTCTAGC
CAGACACGATGATGGCTTACTGGAAATCGTTGGCGTCTATGGGTCTTTCCACTGTGCTCAAATCCAGGTG
AAACTGGCAAATCCTTTTCGAATAGGACAAGCGCACACAGTGCGGCTGACTTTGAAGTGCTCCATGATGC
CGATGCAGGTGGATGGGGAGCCGTGGGCCCAAGGCCCCTGTACTGTCACCATAACGCACAAGACACACGC
ACTGATGCTGTACTTCTCTGGAGAGCAGTCAGATGACGACATCTCAAGCCCTTCGGATCATGAGGACGTA
AAGGAAGCCGAGTAA

Translation (564 aa):
MEGDQRSGPPAQSLLPDGHLVLWTLCSVLLPVFITLWCSLQRSRRQLHRRDIFRKSKHCWRDTDLFSHPT
YCCVCAQHILQGAFCDCCGLRVDEGCLKKVDKRFPCKEIMLKNDKAADAMPHHWIRGNVPLCSYCVFCRQ
QCGSQPKLCDYRCIWCQKTVHDECMRGSLRSEKCDFGEFRNLIIPPSYLTSINQMRKDKNTNYEGLASKF
GKQWTPLIILANSRSGTNMGEGLLGEFKILLNPVQVFDVTKTPPIKALQLCTLLPYYSVRVLVCGGDGTV
GWVLDAIDEMKIKGQEKYIPEVAVLPLGTGNDLSNTLGWGTGYAGEIPVAQVLRNVMEADGIKLDRWKVQ
VTNKGYYNLRKPKEFTMNNYFSVGPDALMALNFHAHREKAPSLFSSRILNKAVYLFYGTKDCLVQECKDL
NKKIELELDGERVELPNLEGIIVLNIGYWGGGCRLWEGMGDETYPLARHDDGLLEIVGVYGSFHCAQIQV
KLANPFRIGQAHTVRLTLKCSMMPMQVDGEPWAQGPCTVTITHKTHALMLYFSGEQSDDDISSPSDHEDV
KEAE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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