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Report for CCDS25091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25091.1 Public Mus musculus 11 Nek8 23 108 98 CCDS HistoryNCBI Gene:140859Re-query CCDS DB by CCDS ID:25091.1Re-query CCDS DB by GeneID:140859See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017549.12 ENSMUSP00000017549.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017549.12Link to Ensembl Protein Viewer:ENSMUSP00000017549.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000017549Re-query CCDS DB by Protein ID:ENSMUSP00000017549
Original member Current member NCBI NM_080849.3 NP_543125.1 Accepted alive Link to Nucleotide Sequence:NM_080849.3Link to Protein Sequence:NP_543125.1Re-query CCDS DB by Nucleotide ID:NM_080849Re-query CCDS DB by Protein ID:NP_543125Link to BLAST:NP_543125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543125.1 698 Q91ZR4 698 100% 0 0

Chromosomal Locations for CCDS 25091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78166749 78166777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78167150 78167308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78167463 78167621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78167723 78167886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78168092 78168242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78168972 78169089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78169372 78169448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78170378 78170528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78170613 78170794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78170873 78170952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78171090 78171298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78172111 78172242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78172451 78172683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78172925 78173130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78176560 78176606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGGAGAAGTACGAGCGGATCCGAGTGGTGGGAAGAGGTGCCTTCGGGATTGTGCACCTGTGCCTGCGAA
AGGCCGACCAGAAGCTGGTGATCCTCAAGCAGATCCCAGTGGAACAGATGACCAAAGAAGAGAGGCAGGC
GGCCCAGAACGAGTGCCAGGTGCTCAAGCTGCTCAACCACCCCAACGTCATCGAGTACTATGAGAATTTC
CTAGAGGACAAGGCCCTCATGATTGCTATGGAGTACGCACCAGGTGGCACCTTGGCCGAGTTCATCCAGA
AGCGCTGCAACTCTCTGCTAGAGGAGGAGACGATCCTTCACTTCTTTGTGCAGATCCTGCTGGCTCTGCA
TCACGTGCACACACATCTCATCCTGCATCGGGACCTCAAGACACAGAACATCCTTCTTGACAAACACCGC
ATGGTGGTCAAGATCGGTGACTTTGGCATCTCTAAGATCCTCAGCAGCAAGAGCAAGGCCTACACGGTGG
TGGGTACACCCTGCTACATCTCCCCTGAGCTGTGTGAGGGCAAACCCTACAACCAGAAGAGTGACATCTG
GGCTCTGGGCTGTGTCTTATATGAGCTGGCCAGCCTCAAGAGGGCCTTCGAGGCTGCAAACTTGCCAGCC
CTGGTGCTGAAGATCATGAGTGGCACCTTCGCACCCATCTCTGACCGGTACAGCCCTGAGCTTCGCCAGC
TCGTCCTGAGTCTGCTTAGCCTGGAACCTGCACAGAGGCCACCCCTCAGCCACATCATGGCGCAGCCCCT
CTGCATCCGGGCCCTACTCAACATCCACACCGATGTGGGCAGCGTGCGCATGCGGAGGGCAGAGAAGTCC
CTGACCCCAGGACCACCTATAGCCTCTGGCAGCACAGGGAGCAGGGCCACCAGTGCCCGATGTAGGGGTG
TCCCCCGGGGACCTGTGAGACCGGCTATCCCACCGCCACTGTCTTCGGTCTACGCTTGGGGTGGTGGCCT
TAGCAGTCCCCTGAGGTTGCCAATGCTCAACACGGAGGTGGTCCAGGTAGCCGCTGGGCGCACGCAGAAG
GCTGGCGTTACGCGCTCTGGACGCCTCATCCTGTGGGAGGCCCCACCCCTGGGAGCTGGAGGCGGCACAC
TCCTTCCTGGAGCCGTGGAGCTGCCTCAGCCCCAGTTTGTCTCTCGTTTCCTGGAAGGCCAGTCAGGTGT
GACCATCAAGCATGTGGCCTGCGGGGACCTGTTCACCGCTTGCTTGACAGACCGAGGCATTATCATGACG
TTCGGCAGTGGCAGCAATGGGTGTTTAGGTCACGGCAACCTGACTGACATCAGCCAGCCCACCATTGTAG
AAGCCTTGCTGGGCTATGAGATGGTGCAGGTGGCCTGTGGGGCCTCTCATGTGCTGGCCCTGTCCACAGA
TGGAGAGTTATTCGCCTGGGGCAGAGGAGATGGTGGTAGACTGGGACTAGGCACCAGGGAGTCCCATAAC
TGCCCTCAGCAGGTGCCTGTGGCCCCAGGACAGGAAGCTCAGAGAGTTGTCTGTGGTATTGACTCTTCCA
TGATCCTCACCTCTCCAGGCAGGGTCCTGGCCTGTGGAAGTAACAGGTTCAACAAGCTAGGCTTGGACCA
CCTATCCCTGGACGAGGAGCCTGTTCCCTACCAGCAAGTGGAGGAGGCCCTGAGCTTCACACCACTGGGC
TCTGCACCTCTGGACCAGGAGCCCCTGCTGTGTGTGGACCTTGGCACTGCTCATTCAGCTGCTATCACTG
CTTCTGGGGACTGCTATACTTTTGGCAGCAATCAACATGGACAGCTGGGCACCAGTTCCCGCAGGGTCAG
CAGGGCACCCTGTCGGGTCCAAGGCCTGGAGGGCATCAAGATGGTGATGGTGGCCTGCGGGGATGCCTTC
ACTGTGGCCGTTGGGGCAGAGGGGGAAGTGTATTCTTGGGGCAAAGGAACCCGAGGCCGACTGGGAAGGA
GGGATGAGGATGCGGGGCTGCCTAGGCCAGTGCAGCTGGATGAGACTCATCCTTACATGGTGACTTCAGT
GTCCTGCTGCCATGGGAACACTCTGCTGGCTGTTCGATCAGTCACAGATGAACCAGTTCCCCCCTGA

Translation (698 aa):
MEKYERIRVVGRGAFGIVHLCLRKADQKLVILKQIPVEQMTKEERQAAQNECQVLKLLNHPNVIEYYENF
LEDKALMIAMEYAPGGTLAEFIQKRCNSLLEEETILHFFVQILLALHHVHTHLILHRDLKTQNILLDKHR
MVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPA
LVLKIMSGTFAPISDRYSPELRQLVLSLLSLEPAQRPPLSHIMAQPLCIRALLNIHTDVGSVRMRRAEKS
LTPGPPIASGSTGSRATSARCRGVPRGPVRPAIPPPLSSVYAWGGGLSSPLRLPMLNTEVVQVAAGRTQK
AGVTRSGRLILWEAPPLGAGGGTLLPGAVELPQPQFVSRFLEGQSGVTIKHVACGDLFTACLTDRGIIMT
FGSGSNGCLGHGNLTDISQPTIVEALLGYEMVQVACGASHVLALSTDGELFAWGRGDGGRLGLGTRESHN
CPQQVPVAPGQEAQRVVCGIDSSMILTSPGRVLACGSNRFNKLGLDHLSLDEEPVPYQQVEEALSFTPLG
SAPLDQEPLLCVDLGTAHSAAITASGDCYTFGSNQHGQLGTSSRRVSRAPCRVQGLEGIKMVMVACGDAF
TVAVGAEGEVYSWGKGTRGRLGRRDEDAGLPRPVQLDETHPYMVTSVSCCHGNTLLAVRSVTDEPVPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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