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Report for CCDS25083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25083.1 Public Mus musculus 11 Nufip2 23 108 98 CCDS HistoryNCBI Gene:68564Re-query CCDS DB by CCDS ID:25083.1Re-query CCDS DB by GeneID:68564See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100802.10 ENSMUSP00000098365.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100802.10Link to Ensembl Protein Viewer:ENSMUSP00000098365.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100802Re-query CCDS DB by Protein ID:ENSMUSP00000098365
Original member Current member NCBI NM_001024205.2 NP_001019376.1 Accepted alive Link to Nucleotide Sequence:NM_001024205.2Link to Protein Sequence:NP_001019376.1Re-query CCDS DB by Nucleotide ID:NM_001024205Re-query CCDS DB by Protein ID:NP_001019376Link to BLAST:NP_001019376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019376.1 692 Q5F2E7-1 692 100% 0 0

Chromosomal Locations for CCDS 25083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77686228 77686507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77691542 77693254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77705509 77705541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77709683 77709735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2079 nt):
ATGGAGGAGAAGCCCGGCCAGCCACAGCCTCAGCACCATCACAGCCACCACCATCCGCACCATCATCCCC
AGCAGCAGCAGCAGCAGCAGTCGCACCACCACCACCATTATTATTTCTACAACCACAGCCACAACCACCA
CCACCACCACCATCACCAGCAGCCTCACCAATACCTGCAGCATGGAGCCGAGGGCAGCCCCAAGGCCCAG
CCCAAGCCGCTGAAACATGAGCAGAAACACACCCTCCAGCAGCACCAGGAAACGCCGAAGAAGAAAACAG
GCTATGGTGAAATAAACGGTAATGCTGGAGAAAGAGAAATATCTTTAAAGAGCCTCAGTTCTGATGAAGC
TACCAACCCTATTTCCAGGGTCCTTAATGGCAACCAGCAAGTTGTAGAAACAAGCCTGAAGCAGACTGTA
AAGACCAGCACCTTTGGAAAAGCAGGAATCAAAACCAAGAATTTTATTCAGAAAAACAGTATGGACAAAA
AGAATGGGAAGTCTTATGAAAACAAATCTGGAGAGACCCAGGCTGTAGATAAGACCGATACCATAGCAAT
TCCAAATGGTGTTATAACAAGTAGTTCAGGCTATATTACTAATGGTTATATGAGCAAAGGAGCAGATAAT
GATGGTAGTGGATCTGAGAGTGGATATACCACTCCTAAAAAAAGGAAAGCTAGGCGCAATAGTGCCAAGG
GTTGTGAAAACCTTAATTTAGTGCAGGACAAAATAATGCAAGAGACTAGTGTCCCAGCATTAAAACAGGG
ACTTGAAACTTTAAAGCCTGACTATAGTGAACAAAAGGGAATGCGAGTAGATGGTTCAAAGCCTATTTGG
AAATATGAAACTGGACCTGGAGGAACAAGTCGTGGAAAACCTGCTATGGGTGACGTGCTTCGTAAAAGCT
CTGATATTAAACCTGGTTTGAGTAGCAAAAAATTTGATGATCGGCCTAAAGGAAAGCATGCCTCAGCTGC
TGCCTCCAAAGAGGACTCATGGACCTTGTTTAAGCCACCCCCAGTTTTTCCAGTGGACAATAGCAGTGCA
AAAATAGTTCCTAAAATAAGTTATGCAAGCAAAGTTAAGGAAAACCTCAACAAAACTGTACAGAACTCCT
CCGTGTCACCATCTTCATCTTCATCATCATCATCTACTGGGGAAACTCAGACCCAGTCTTCAAGTCGGTT
ATCCCAGGTCCCGATGTCAGCTCTGAAATCTGTTACTTCTGCCAGTTTTTCTAATGGGCCTGTTTTAGCA
GGAACTGATGGAAGTGTGTACCCATCTGGGGGTCAGCCACTGCTAACGACTGCTGCTAATACTTTAACAC
CCATCTCTACTGGGACTGATTCTGTTCTTCAGGACATGAGTCTGGCTTCAGCAGCCGTTGAACAAATTAA
ATCTAGCCTTTTTATCTACCCTTCAAATATGCAAACAGTGCTGTTAAGTGCACAAGTAGATCTGCCCTCT
CAGACAGATCAGCAAAACCTGGGGGATATCTTCCAGAATCAATGGGGTTTATCATTTATAAATGAGCCCA
GTGCTGGCCCAGAGACTGTTATTGGAAAGTCATCAGATCATAAAGTGATGGAAGTGACATTTCAAGGAGA
ATATCCTGCCACTTTGGTTTCACAGGGTGCTGAAATAATTCCCTCAGGAACTGAGCATCCTGTGTTTCCC
AAGGCTTATGAGCTGGAAAAACGGACTAGTCCTCAAGTTCTGGGTCACATTCTAAAACCTGGGACTACTG
AGAGTGGAGCCTTATCCTTGGACCCCAGTCATATAGGTGACCTGCAAAAAGCAGACACCAGTAGTCAAGG
TGCTTTAGTGTTTCTCTCAAAGGACTACGAAATAGAAAATCAAAATCCCCTGGCCTCTCCTACGAACACT
TTGTTAGGCTCCGCCAAAGAACAGAGATACCAGAGAGGCCTAGAAAGGAATGATAGCTGGGGTTCTTTTG
ACCTGAGGGCTGCTATTGTATATCACACTAAAGAAATGGAATCTATATGGAATTTGCAGAAGCAAGATCC
CAAAAGGATAATCACTTACAATGAAGCCATGGATAGTCCAGATCAATGA

Translation (692 aa):
MEEKPGQPQPQHHHSHHHPHHHPQQQQQQQSHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKAQ
PKPLKHEQKHTLQQHQETPKKKTGYGEINGNAGEREISLKSLSSDEATNPISRVLNGNQQVVETSLKQTV
KTSTFGKAGIKTKNFIQKNSMDKKNGKSYENKSGETQAVDKTDTIAIPNGVITSSSGYITNGYMSKGADN
DGSGSESGYTTPKKRKARRNSAKGCENLNLVQDKIMQETSVPALKQGLETLKPDYSEQKGMRVDGSKPIW
KYETGPGGTSRGKPAMGDVLRKSSDIKPGLSSKKFDDRPKGKHASAAASKEDSWTLFKPPPVFPVDNSSA
KIVPKISYASKVKENLNKTVQNSSVSPSSSSSSSSTGETQTQSSSRLSQVPMSALKSVTSASFSNGPVLA
GTDGSVYPSGGQPLLTTAANTLTPISTGTDSVLQDMSLASAAVEQIKSSLFIYPSNMQTVLLSAQVDLPS
QTDQQNLGDIFQNQWGLSFINEPSAGPETVIGKSSDHKVMEVTFQGEYPATLVSQGAEIIPSGTEHPVFP
KAYELEKRTSPQVLGHILKPGTTESGALSLDPSHIGDLQKADTSSQGALVFLSKDYEIENQNPLASPTNT
LLGSAKEQRYQRGLERNDSWGSFDLRAAIVYHTKEMESIWNLQKQDPKRIITYNEAMDSPDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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