NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24522.1 Public Mus musculus 11 Hba-x 23 108 98 CCDS HistoryNCBI Gene:15126Re-query CCDS DB by CCDS ID:24522.1Re-query CCDS DB by GeneID:15126See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020531.8 ENSMUSP00000020531.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020531.8Link to Ensembl Protein Viewer:ENSMUSP00000020531.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000020531Re-query CCDS DB by Protein ID:ENSMUSP00000020531
Original member Current member NCBI NM_010405.4 NP_034535.1 Accepted alive Link to Nucleotide Sequence:NM_010405.4Link to Protein Sequence:NP_034535.1Re-query CCDS DB by Nucleotide ID:NM_010405Re-query CCDS DB by Protein ID:NP_034535Link to BLAST:NP_034535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034535.1 142 P06467 142 100% 0 0

Chromosomal Locations for CCDS 24522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32276664 32276758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32277569 32277773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32277880 32278008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGTCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGAGAAGATGGCTGCTCAGGCCGAGC
CCATTGGCACTGAGACTCTAGAGAGGCTCTTCTGCAGCTACCCCCAGACGAAGACCTACTTCCCCCACTT
CGACCTGCACCATGGGTCTCAGCAGTTGCGGGCCCACGGCTTCAAGATCATGACCGCCGTAGGGGATGCG
GTTAAGAGCATCGACAACCTCTCTAGTGCTTTGACTAAGCTGAGCGAGCTGCATGCCTACATCCTGCGTG
TGGATCCGGTCAACTTCAAGCTCCTGTCCCACTGTCTGCTGGTCACAATGGCCGCACGCTTTCCCGCCGA
CTTCACCCCTGAGGTCCACGAAGCCTGGGACAAGTTCATGTCTATCCTGTCTTCTATCCTGACTGAGAAG
TACCGCTAA

Translation (142 aa):
MSLMKNERAIIMSMWEKMAAQAEPIGTETLERLFCSYPQTKTYFPHFDLHHGSQQLRAHGFKIMTAVGDA
VKSIDNLSSALTKLSELHAYILRVDPVNFKLLSHCLLVTMAARFPADFTPEVHEAWDKFMSILSSILTEK
YR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH