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Report for CCDS24499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24499.1 Public Mus musculus 11 Rtn4 23 108 98 CCDS HistoryNCBI Gene:68585Re-query CCDS DB by CCDS ID:24499.1Re-query CCDS DB by GeneID:68585See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078830.10 ENSMUSP00000077875.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078830.10Link to Ensembl Protein Viewer:ENSMUSP00000077875.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078830Re-query CCDS DB by Protein ID:ENSMUSP00000077875
Original member Current member EBI ENSMUST00000170731.7 ENSMUSP00000126413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170731.7Link to Ensembl Protein Viewer:ENSMUSP00000126413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170731Re-query CCDS DB by Protein ID:ENSMUSP00000126413
Original member Current member NCBI NM_194052.3 NP_918941.1 Accepted alive Link to Nucleotide Sequence:NM_194052.3Link to Protein Sequence:NP_918941.1Re-query CCDS DB by Nucleotide ID:NM_194052Re-query CCDS DB by Protein ID:NP_918941Link to BLAST:NP_918941.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_918941.1 356 Q99P72-5 356 100% 0 0

Chromosomal Locations for CCDS 24499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 29693189 29693693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29733633 29733840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29736360 29736498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29740981 29741050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29741500 29741546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29741695 29741753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29741987 29742029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGAAGACATAGACCAGTCGTCGCTGGTCTCCTCGTCCGCGGATAGCCCGCCCCGGCCCCCGCCCGCTT
TCAAGTACCAGTTCGTGACGGAGCCCGAGGACGAGGAGGACGAGGAAGACGAGGAGGAGGAGGAGGACGA
CGAGGACCTGGAGGAATTGGAGGTGCTGGAGAGGAAGCCCGCAGCCGGGCTGTCCGCGGCTCCGGTGCCC
CCCGCCGCCGCACCGCTGCTGGACTTCAGCAGCGACTCGGTGCCCCCCGCGCCCCGCGGGCCGCTGCCGG
CCGCGCCCCCCACCGCCCCTGAGAGGCAGCCGTCCTGGGAACGCAGCCCCGCGGCGTCCGCGCCATCCCT
GCCGCCCGCTGCCGCAGTCCTGCCCTCCAAGCTCCCGGAGGACGACGAGCCTCCAGCGCGGCCTCCGGCG
CCAGCCGGCGCGAGCCCCCTAGCGGAGCCCGCCGCGCCCCCTTCCACGCCGGCCGCGCCCAAGCGCAGGG
GCTCGGGCTCAGTGGTTGTTGACCTCCTGTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGC
CAGCTTATTCCTGCTGCTGTCTCTGACAGTGTTCAGCATTGTCAGTGTAACGGCCTACATTGCCTTGGCC
CTGCTCTCTGTGACTATCAGCTTTAGGATATATAAGGGTGTGATCCAAGCTATCCAGAAATCAGATGAAG
GCCACCCATTCAGGGCATATTTGGAATCTGAAGTTGCCATATCAGAGGAATTGGTTCAGAAATATAGTAA
TTCTGCTCTTGGTCATGTGAACAGCACAATAAAAGAATTGAGGCGTCTCTTCTTAGTTGATGATTTAGTT
GATTCCCTGAAGTTTGCAGTGTTGATGTGGGTATTTACTTACGTTGGTGCCTTGTTCAATGGTTTGACAC
TACTGATTTTAGCTCTGATCTCACTCTTCAGTATTCCTGTTATATATGAACGGCATCAGGCGCAGATAGA
TCATTATCTAGGACTTGCAAACAAGAGCGTTAAGGATGCCATGGCCAAAATCCAAGCAAAAATCCCTGGA
TTGAAGCGCAAAGCAGAATGA

Translation (356 aa):
MEDIDQSSLVSSSADSPPRPPPAFKYQFVTEPEDEEDEEDEEEEEDDEDLEELEVLERKPAAGLSAAPVP
PAAAPLLDFSSDSVPPAPRGPLPAAPPTAPERQPSWERSPAASAPSLPPAAAVLPSKLPEDDEPPARPPA
PAGASPLAEPAAPPSTPAAPKRRGSGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALA
LLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLV
DSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKIPG
LKRKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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