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Report for CCDS24381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24381.1 Public Mus musculus 11 Castor1 23 108 98 CCDS HistoryNCBI Gene:71962Re-query CCDS DB by CCDS ID:24381.1Re-query CCDS DB by GeneID:71962See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020699.3 ENSMUSP00000020699.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020699.3Link to Ensembl Protein Viewer:ENSMUSP00000020699.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020699Re-query CCDS DB by Protein ID:ENSMUSP00000020699
Original member Current member NCBI NM_028022.2 NP_082298.1 Accepted alive Link to Nucleotide Sequence:NM_028022.2Link to Protein Sequence:NP_082298.1Re-query CCDS DB by Nucleotide ID:NM_028022Re-query CCDS DB by Protein ID:NP_082298Link to BLAST:NP_082298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082298.1 331 Q9CWQ8 331 100% 0 0

Chromosomal Locations for CCDS 24381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4218314 4218426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4218948 4219018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4220108 4220292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4220375 4220507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4220683 4220806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4221146 4221259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4221424 4221506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4221601 4221695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4221843 4221920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGAACTTCACATCCTAGAGCACCGGGTGCGAGTACTGAGCATTGCCCGTCCGGGCCTCTGGCTCTACA
CCCACCCGCTCATCAAGCTGCTCTTCCTGCCCTGTCGCAGTCGGTGCAAGTTCTTCAGCCTGACTGAGAC
TCCGGAAGATTACACTCTCATGGTGGATGAGGAGGGCTTTAAAGAGCTACCCCCATCCGAGTTCCTGCAA
GTGGCTGAGGCCACATGGCTGGTGATGAACGTATCTCACAGTGGCTCCGTGGTGCAGGCTGCTGGAGTAA
CCAAGATTGCCCGGTCTGTCATTGCCCCGCTGGCTGAACACCATGTGTCTGTTCTGATGTTGTCCACATA
CCAGACAGACTTCATCCTGGTACGGGAGCAGGACCTGTCTGTGGTGATCCACACACTGGCCCAGGAGTTC
CAAATCTACCGTGAAGTAGGCGGGGAGCCTGTGCCCGTTACTGGAGACGATTCCAGCAATGGCTTTCCCC
AGATCCAGCACGGGCCCAGTCCCACGGTGCATCCCATTCAGAGCCCTCAGAACCGCTTTTGTGTCCTCAC
ACTGGACCCTGAGACACTGCCGGCTGTCGCCACCACCCTCATCGATGTCCTCTTCTACTCCCACAGTGTC
CCCAAGGAAGCGGCCTCGGGCGGTCCTGAATCAACGTCCATTCCGTTCTTCGCTTTCTCCCTCATCGAGG
GGTACATCTCCATTGTCATGGATGCAGAGATCCAGAGAAAGTTCCCCAGTGACCTCCTGCTGACCAGTTC
TTCTGGGGAGCTGTGGAGGATGGTGCGCATCGGGGGACAGCCCCTGGGCTTCGATGAATGTGGGATTGTG
GCCCAGATTGCGGGTCCCCTGGCGGCTGTTGACATCTCTGCTTACTACATCAGCACATTCAACTTTGACC
ATGCGCTGGTTCCTGAAGACGAGATCGGCTGTGTCATTGATATTCTCCAGCGAAGGCAGGAAAGCCAGGC
TTCCAAGGACCCATAG

Translation (331 aa):
MELHILEHRVRVLSIARPGLWLYTHPLIKLLFLPCRSRCKFFSLTETPEDYTLMVDEEGFKELPPSEFLQ
VAEATWLVMNVSHSGSVVQAAGVTKIARSVIAPLAEHHVSVLMLSTYQTDFILVREQDLSVVIHTLAQEF
QIYREVGGEPVPVTGDDSSNGFPQIQHGPSPTVHPIQSPQNRFCVLTLDPETLPAVATTLIDVLFYSHSV
PKEAASGGPESTSIPFFAFSLIEGYISIVMDAEIQRKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIV
AQIAGPLAAVDISAYYISTFNFDHALVPEDEIGCVIDILQRRQESQASKDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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