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Report for CCDS24374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24374.1 Public Mus musculus 11 Sec14l4 23 108 98 CCDS HistoryNCBI Gene:103655Re-query CCDS DB by CCDS ID:24374.1Re-query CCDS DB by GeneID:103655See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019512.7 ENSMUSP00000019512.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019512.7Link to Ensembl Protein Viewer:ENSMUSP00000019512.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019512Re-query CCDS DB by Protein ID:ENSMUSP00000019512
Original member Current member NCBI NM_146013.1 NP_666125.1 Accepted alive Link to Nucleotide Sequence:NM_146013.1Link to Protein Sequence:NP_666125.1Re-query CCDS DB by Nucleotide ID:NM_146013Re-query CCDS DB by Protein ID:NP_666125Link to BLAST:NP_666125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666125.1 403 Q8R0F9 403 100% 0 0

Chromosomal Locations for CCDS 24374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4031846 4031899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4035123 4035198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4039436 4039479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4039771 4039830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4039937 4040125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4041737 4041832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4042191 4042251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4043287 4043370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4043653 4043759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4043833 4043972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4044064 4044233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4046213 4046343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAGAGGACAAGTCGGGGACCTGAGCCCGCAGCAGCAGGAGGCTCTGGCCAGGTTCCGGGAGACCCTCC
AGGATCTGCTGCCCACCCTGCCCAAGGCCGATGACTACTTCCTTCTGCGATGGCTCCGAGCTCGGAACTT
TGACCTTAAGAAATCTGAGGACATGCTCCGAAAGCATGTGGAGTTCCGGAATCAGCAGAACCTGGACCAG
ATCCTGACGTGGCAGGCACCAGAGGTGATCCAACTCTATGACTCTGGTGGTCTGTCTGGCTATGACTACG
AAGGCTGCCCTGTGTGGTTTGACATCATTGGGACAATGGACCCCAAAGGCCTTTTTATGTCAGCCTCTAA
GCAGGACATGATCCGGAAGCGTATCAAAGTCTGTGAGATGCTTCTCCATGAGTGTGAGCTGCAGAGTCAA
AAGTTGGGCAGGAAGATTGAGAGAATGGTGATGGTGTTCGACATGGAAGGGCTGAGTCTGAGGCACTTAT
GGAAGCCAGCTGTGGAGGTCTACCAGCAGTTTTTTGCCATCTTGGAAGCAAATTATCCTGAGACGGTGAA
AAATTTAATCATTATTCGAGCCCCCAAGCTCTTCCCAGTGGCCTTCAACCTGGTCAAATCATTCATGGGA
GAGGAGACACAAAAGAAGATAGTGATTCTGGGAGGTAACTGGAAACAAGAGCTTGTCAAGTTTGTGAGCC
CTGACCAGCTGCCTGTGGAATTTGGGGGCACCATGACTGACCCTGATGGTAACCCCAAGTGCCTGACCAA
GATCAACTATGGGGGTGAGGTGCCGAAGCGCTATTACCTGAGCAATCAGGAGAGGCCACAGTATGAGCAC
AGTGTGGTCGTGGGCCGAGGCTCCTCCCACCAGGTGGAGAATGAGATCCTGTTCCCAGGCTGTGTGCTCA
GGTGGCAGTTTGCTTCAGATGGTGGAGACATCGGCTTTGGAGTTTTCCTGAAGACCAGGATGGGGGAGCG
GCAGAAGGCTGGGGAGATGGTGGAGGTGCTGCCCAGCCAGCGCTACAATGCCCACATGGTGCCCGAGGAT
GGGAGCCTCAACTGCCTCAAGGCTGGAGTCTATGTCCTGCGCTTTGACAACACCTACAGCCTCCTGCATA
CCAAGAAGGTCGGCTACACTGCGGAGGTGCTTCTTCCAGACAAGGCCTGTGAGGAGAAGTTGCAGGGCCT
AGGCTCAGTGAGCCCTCCTTAG

Translation (403 aa):
MRGQVGDLSPQQQEALARFRETLQDLLPTLPKADDYFLLRWLRARNFDLKKSEDMLRKHVEFRNQQNLDQ
ILTWQAPEVIQLYDSGGLSGYDYEGCPVWFDIIGTMDPKGLFMSASKQDMIRKRIKVCEMLLHECELQSQ
KLGRKIERMVMVFDMEGLSLRHLWKPAVEVYQQFFAILEANYPETVKNLIIIRAPKLFPVAFNLVKSFMG
EETQKKIVILGGNWKQELVKFVSPDQLPVEFGGTMTDPDGNPKCLTKINYGGEVPKRYYLSNQERPQYEH
SVVVGRGSSHQVENEILFPGCVLRWQFASDGGDIGFGVFLKTRMGERQKAGEMVEVLPSQRYNAHMVPED
GSLNCLKAGVYVLRFDNTYSLLHTKKVGYTAEVLLPDKACEEKLQGLGSVSPP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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