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Report for CCDS24156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24156.1 Public Mus musculus 10 Slc6a15 23 108 98 CCDS HistoryNCBI Gene:103098Re-query CCDS DB by CCDS ID:24156.1Re-query CCDS DB by GeneID:103098See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074204.11 ENSMUSP00000073829.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074204.11Link to Ensembl Protein Viewer:ENSMUSP00000073829.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074204Re-query CCDS DB by Protein ID:ENSMUSP00000073829
Original member Current member EBI ENSMUST00000179636.2 ENSMUSP00000136676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179636.2Link to Ensembl Protein Viewer:ENSMUSP00000136676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179636Re-query CCDS DB by Protein ID:ENSMUSP00000136676
Original member Current member NCBI NM_001252330.1 NP_001239259.1 Accepted alive Link to Nucleotide Sequence:NM_001252330.1Link to Protein Sequence:NP_001239259.1Re-query CCDS DB by Nucleotide ID:NM_001252330Re-query CCDS DB by Protein ID:NP_001239259Link to BLAST:NP_001239259.1
Original member Current member NCBI NM_001358821.1 NP_001345750.1 Accepted alive Link to Nucleotide Sequence:NM_001358821.1Link to Protein Sequence:NP_001345750.1Re-query CCDS DB by Nucleotide ID:NM_001358821Re-query CCDS DB by Protein ID:NP_001345750Link to BLAST:NP_001345750.1
Original member Current member NCBI NM_175328.3 NP_780537.1 Accepted alive Link to Nucleotide Sequence:NM_175328.3Link to Protein Sequence:NP_780537.1Re-query CCDS DB by Nucleotide ID:NM_175328Re-query CCDS DB by Protein ID:NP_780537Link to BLAST:NP_780537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239259.1 729 Q8BG16 729 100% 0 0
NP_001345750.1 729 Q8BG16 729 100% 0 0
NP_780537.1 729 Q8BG16 729 100% 0 0

Chromosomal Locations for CCDS 24156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103389053 103389341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103393391 103393548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103393901 103394027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103394990 103395171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103400182 103400292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103404285 103404526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103404627 103404819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103408203 103408395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103409653 103409812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103416633 103416795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103418023 103418394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGCCTAAGAATAGCAAAGTGGTAAAGAGAGATTTGGATGATGATGTCATTGAATCTGTCAAAGACCTCC
TGTCCAACGAAGACTCAGTGGAAGAGGTTTCTAAGAAGAGTGAACTAATTGTCGATGTTCAGGAAGAGAA
AGATACAGATGCTGAAGATGGATCTGAAGCTGATGATGAAAGGCCAGCCTGGAACAGTAAGCTGCAATAC
ATTCTGGCCCAAGTTGGATTTTCTGTAGGTCTGGGGAATGTGTGGCGGTTCCCATACCTCTGCCAAAAGA
ATGGTGGTGGTGCATATCTTTTGCCGTATTTAATACTACTTCTGGTGATAGGAATTCCACTCTTTTTCCT
GGAACTTTCTGTGGGTCAAAGAATTCGAAGAGGCAGCATTGGGGTTTGGAATTACATAAGCCCTAAATTG
GGTGGGATTGGCTTCGCAAGCTGTGTAGTGTGCTATTTTGTGGCTCTCTACTACAATGTCATCATTGGCT
GGACATTATTTTACTTTTCTCAGTCTTTTCAACAACCTCTTCCTTGGGATCAATGCCCCCTGGTGAAAAA
CGCATCTCATACTTATGTTGAGCCAGAATGTGAACAAAGTTCTGCCACCACCTATTACTGGTACCGGGAA
GCACTGGATATCACCAGCTCCATCTCTGACAGTGGAGGCTTAAACTGGAAGATGACGGTCTGCCTTCTGG
TTGCCTGGGTCATGGTTTGTCTGGCCATGATCAAAGGCATTCAGTCCTCTGGAAAAATCATGTATTTCAG
TTCTCTGTTCCCCTACGTGGTCCTTATATGTTTCCTAATAAGATCTCTCCTTTTAAATGGTTCAATTGAT
GGCATCCGACACATGTTCACTCCTAAGCTGGAAATGATGTTGGAGCCCAAGGTTTGGAGAGAGGCAGCAA
CTCAGGTGTTCTTTGCATTGGGTTTGGGATTTGGTGGAGTCATCGCGTTTTCAAGTTATAACAAGAGAGA
CAACAACTGCCACTTCGATGCTGTCCTAGTGTCTTTCATCAACTTTTTCACTTCAGTTCTGGCAACACTG
GTGGTGTTTGCAGTTCTGGGGTTCAAAGCCAATATCGTAAATGAAAAATGCATTTCACAAAACTCCGAGA
TGATCTTGAAACTTTTGAAAATGGGAAACATTAGTTGGGATGTCATTCCCCATCACATCAACCTCTCAGC
TGTCACTGTGGAAGATTATCGTTTAGTTTACGACATCATTCAAAAAGTGAAGGAGGAGGAGTTTGCTGTT
CTTCATCTCAACGCCTGTCAAATTGAGGATGAGCTAAATAAAGCTGTGCAGGGCACTGGCTTGGCTTTCA
TTGCCTTTACAGAGGCCATGACACATTTCCCTGCATCTCCTTTCTGGTCAGTGATGTTTTTCCTCATGTT
GATAAATCTCGGCCTCGGCAGCATGTTTGGAACAATTGAAGGGATCATCACTCCTATTGTGGATACCTTC
AAAGTGAGGAAGGAAATACTCACTGTTATCTGTTGCCTCCTGGCATTTTGTATTGGCTTGATATTCGTGC
AGCGCTCTGGAAATTACTTCGTGACAATGTTTGACGATTATTCTGCTACATTGCCTCTGCTAATTGTGGT
CATCTTGGAGAATATTGCCGTGAGCTTTGTTTATGGCATAGATAAGTTTATAGAAGACCTCACAGACATG
TTAGGATTTGCTCCAAGCAAATATTACTATTATATGTGGAAATACATTTCTCCTCTAATGCTACTAACGT
TGCTAATAGCTAGCATTGTGAATATGGGATTAAGTCCTCCCGGATATAATGCATGGATCAAGGAGAAGGC
ATCGGAAGAATTTCTGAGCTACCCGATGTGGGGGATGGTCGTCTGTTTCTCTCTGATGGTGCTGGCCATA
CTTCCTGTCCCAGTGGTGTTCATCATTCGTCGCTGCAACCTCATAGATGATAGTTCTGGTAACTTGGCCT
CCGTGACCTATAAGAGAGGAAGAGTCCTGAAGGAACCTGTGAACTTGGAAGGAGATGACGCAAGCCTCAT
TCATGGAAAGATACCGAGTGAAATGTCATCTCCAAATTTTGGTAAAAATATTTATCGAAAACAAAGTGGT
TCCCCAACACTGGATACTGCTCCCAATGGACGCTATGGGATTGGGTATTTGATGGCAGACATGCCAGATA
TGCCAGAGTCTGACTTGTAG

Translation (729 aa):
MPKNSKVVKRDLDDDVIESVKDLLSNEDSVEEVSKKSELIVDVQEEKDTDAEDGSEADDERPAWNSKLQY
ILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL
GGIGFASCVVCYFVALYYNVIIGWTLFYFSQSFQQPLPWDQCPLVKNASHTYVEPECEQSSATTYYWYRE
ALDITSSISDSGGLNWKMTVCLLVAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLIRSLLLNGSID
GIRHMFTPKLEMMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLVSFINFFTSVLATL
VVFAVLGFKANIVNEKCISQNSEMILKLLKMGNISWDVIPHHINLSAVTVEDYRLVYDIIQKVKEEEFAV
LHLNACQIEDELNKAVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMFGTIEGIITPIVDTF
KVRKEILTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFIEDLTDM
LGFAPSKYYYYMWKYISPLMLLTLLIASIVNMGLSPPGYNAWIKEKASEEFLSYPMWGMVVCFSLMVLAI
LPVPVVFIIRRCNLIDDSSGNLASVTYKRGRVLKEPVNLEGDDASLIHGKIPSEMSSPNFGKNIYRKQSG
SPTLDTAPNGRYGIGYLMADMPDMPESDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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