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Report for CCDS23251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23251.1 Public Mus musculus 9 Celf6 23 108 98 CCDS HistoryNCBI Gene:76183Re-query CCDS DB by CCDS ID:23251.1Re-query CCDS DB by GeneID:76183See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034840.9 ENSMUSP00000034840.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034840.9Link to Ensembl Protein Viewer:ENSMUSP00000034840.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034840Re-query CCDS DB by Protein ID:ENSMUSP00000034840
Original member NCBI NM_175235.3 NP_780444.2 Updated not alive Link to Nucleotide Sequence:NM_175235.3Link to Protein Sequence:NP_780444.2Re-query CCDS DB by Nucleotide ID:NM_175235Re-query CCDS DB by Protein ID:NP_780444
Current member NCBI NM_175235.4 NP_780444.2 Accepted alive Link to Nucleotide Sequence:NM_175235.4Link to Protein Sequence:NP_780444.2Re-query CCDS DB by Nucleotide ID:NM_175235Re-query CCDS DB by Protein ID:NP_780444Link to BLAST:NP_780444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780444.2 460 Q7TN33-1 460 100% 0 0

Chromosomal Locations for CCDS 23251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59578378 59578639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59582276 59582358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59590635 59590683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59602577 59602705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59602800 59602879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59602995 59603138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59603235 59603367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59603448 59603597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59604130 59604210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59604300 59604443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59604957 59605084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGCCGCGGCGCCTGGAGGGTCTGCGCCGCCCGCCGGCCCCAGCCCGCGCTTGGCTTTCAGCACCGCGG
ACAGCGGCGGCGGCATGAGCGGGCTGAACCCAGGTCCCGCGGTGCCCATGAAGGACCACGACGCCATCAA
GCTCTTCGTGGGGCAGATCCCGCGGGGCTTGGACGAGCAGGACCTCAAGCCGCTGTTCGAGGAGTTCGGC
CGCATCTACGAGCTGACGGTGCTGAAGGACCGGCTCACCGGCCTCCACAAAGGCTGTGCCTTCCTCACCT
ACTGCGCCCGGGACTCTGCCCTCAAGGCCCAGAGTGCACTGCATGAGCAGAAGACCCTGCCAGGGATGAA
TCGTCCGATCCAAGTGAAGCCGGCTGCCAGTGAGGGCCGAGGAGAGGACCGGAAGCTGTTTGTGGGGATG
TTGGGCAAGCAGCAGGGTGAGGAGGATGTCAGACGTCTGTTCCAGCCCTTCGGCCATATCGAGGAGTGCA
CTGTCCTGCGGAGTCCGGACGGTACCAGTAAAGGCTGTGCCTTTGTGAAATTCGGAAGTCAAGGGGAAGC
CCAAGCTGCCATCCAGGGACTACACGGTAGCCGGACAATGACGGGTGCCTCCTCCAGCCTGGTGGTTAAG
CTGGCAGACACCGACCGGGAGCGCGCGCTGCGAAGGATGCAGCAAATGGCTGGCCAGCTGGGTGCCTTCC
ACCCGGCACCGCTGCCCCTCGGGGCCTGTGGCGCCTATACCACTGCGATCCTACAGCACCAGGCAGCGTT
GCTGGCCGCAGCGCAGGGTCCGGGGTTAGGCCAGGTGGCCGCGGTGGCCGCCCAGATGCAGCACGTGGCG
GCCTTCAGCTTGGTGGCTGCACCGCTGTTGCCCGCGGCAGCCAATACATCCCCTGGTGGCAATGGCCCTG
GTGCACTCCCTGGCCTTCCAGCGCCCATGGGAGTCAATGGATTCGGCTCCTTGACCCCCCAGAGCAACGG
ACAGCCAGGCTCCGACACGCTCTATAACAACGGGGTTTCCCCTTACCCAGCAGCCTATCCCTCGGCCTAT
GCCCCAGCGAGCACAGCTTTTTCCCAACAGCCTTCAGCTCTGCCTCAACAACAAAGAGAAGGCCCCGAAG
GCTGTAACCTCTTCATCTATCACCTGCCTCAGGAGTTTGGGGATGCAGAACTCATACAGACATTCCTGCC
CTTCGGAGCTGTTGTCTCTGCCAAAGTTTTTGTGGACCGTGCCACCAATCAGAGCAAGTGTTTTGGGTTT
GTTAGTTTTGACAATCCAACCAGTGCCCAGACCGCCATCCAGGCCATGAATGGCTTTCAAATCGGCATGA
AGAGGCTCAAGGTCCAGCTAAAGAGACCTAAGGATGCCAACAGGCCTTACTGA

Translation (460 aa):
MAAAPGGSAPPAGPSPRLAFSTADSGGGMSGLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFG
RIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGM
LGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK
LADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQMQHVA
AFSLVAAPLLPAAANTSPGGNGPGALPGLPAPMGVNGFGSLTPQSNGQPGSDTLYNNGVSPYPAAYPSAY
APASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF
VSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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