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Report for CCDS22821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22821.1 Public Mus musculus 9 Endod1 23 108 98 CCDS HistoryNCBI Gene:71946Re-query CCDS DB by CCDS ID:22821.1Re-query CCDS DB by GeneID:71946See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167549.1 ENSMUSP00000127751.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167549.1Link to Ensembl Protein Viewer:ENSMUSP00000127751.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167549Re-query CCDS DB by Protein ID:ENSMUSP00000127751
Original member Current member NCBI NM_028013.3 NP_082289.2 Accepted alive Link to Nucleotide Sequence:NM_028013.3Link to Protein Sequence:NP_082289.2Re-query CCDS DB by Nucleotide ID:NM_028013Re-query CCDS DB by Protein ID:NP_082289Link to BLAST:NP_082289.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082289.2 501 Q8C522 501 100% 0 0

Chromosomal Locations for CCDS 22821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14356682 14357887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14380671 14380970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGGCTGTGCGCGCTGGCTGGCGCTGGGCGGCCTCCTGGCCCTGGCAGGGCTGTTGCAGGCCCGGCTGC
TGCTCCCGCAGCAAGCGGGCTTCGGCGAATGCGACCGTTTCTTCTACAAGGGGACCCCACCCGCCGGGCT
GGCGACCGAAGCGCACGTGAGGATCTGTCAACGCTTCGCGGGCTCCGAGCGCTTCGCCACTCTGTACAGT
CCTGGCCACCGCATCCCCGTGTTCTCCGCGTTTCGCGCTGCGCGCCCGGCGTCCCGCAGTGCCGAGCAGC
GCGGGCTGCTGGAGCCGCAGATTGATGACCCTGACAGCAACCTCGAGGAGGTCATTGACGAGGCCAACGC
TCTCACCTCAGTGGACAATCTGGGAAGCAAGCAAGCCTTGAATGCAGACTACATTGACTCTGACTATGAA
ATCGGACAGCTGTACCCATTTCCTCTTAACAGTGACCTCCAGATGGCCACATTCCCGCTCACAAATTCAG
TTCCAATGACCCAGTCTTTCCGGGAACGATGGCACATGAATCTCAACAGCCTCATGGACCGAGCCTTGAT
CCCACACTGCAGTGAAGGCAAAGACCTGTATATCCTCACGGGGGCTGTTCCCTCAGAGCACAGAGTTAAG
GGCAAAGTGACTATCCCTGAATTCGTCTGGCTGGCAGCTTGCTGTGCAGTCCCTGGAGAAGGCTGGGCCA
TGGGCTTCATCAAGCACACCCAGGACATTGATGTCATAGAAGATGTGATGCTGAGAGACCTTGAGAAGCT
GCTTCCTCATAAGCCTCAACTGTTCCAGGACAACTGTGGTGAGATGGAGCAAGATACAGAGAAGATGAAG
AAGATTCTGGAAGTGGTCAACCAAGTCCAAGATGAGGAGCGGTCTCTGCAGTCTCAAGAGAGAATGAGTC
CCCTCGCCAGCACCCAAAGCCAGAGGTCTGCCCTGCTGTCCCCAGAAGCACCACCAGAGGGAGGGAGCAG
TTTTCTGGGACAAGTCCTGGGTTTCCTTGCTACCCCATTCATTAAGCTTTTCCAGTTAATTTATTACCTT
GTTACAGCGGTCTTAAGGAATATAGTCCATCTCCTTTGGTTGGTTGCCAAGCAGGCAATAAACACTGTTG
AGAGTTGCCTATACCATCTAGGCGAAGCCACTGTCTCATACCTCGTGGCCATTGGACAAGAGCTGGTGAG
CATTCCCTGGAAAGTGCTCAAGGTTGTGGCCAAAGTCATCCGGGCCTTCCTCCGGATCCTCTGCTGTCTG
CTGAAGGCTGTCTGCCGAGCTCTGAGCATCCCTCTCCGAGTCCTTGTGGATGTAGCCACTTTCCCTGTGT
ATACTGTGGGGGCCATTCCCATTGTGTGCAAGGACATTGCTGTGGGCCTGGGTGGCACCCTCTCACTCCT
CTTTGACACTGCTTTTGGCACCGTAGGTGGCTTGTTTCAGATTGTTTTTAGTGTCTTCAAGCGGATTGGC
TACAAGGTTACTTTAGACAATTCCGGGGAGTTCTAG

Translation (501 aa):
MGCARWLALGGLLALAGLLQARLLLPQQAGFGECDRFFYKGTPPAGLATEAHVRICQRFAGSERFATLYS
PGHRIPVFSAFRAARPASRSAEQRGLLEPQIDDPDSNLEEVIDEANALTSVDNLGSKQALNADYIDSDYE
IGQLYPFPLNSDLQMATFPLTNSVPMTQSFRERWHMNLNSLMDRALIPHCSEGKDLYILTGAVPSEHRVK
GKVTIPEFVWLAACCAVPGEGWAMGFIKHTQDIDVIEDVMLRDLEKLLPHKPQLFQDNCGEMEQDTEKMK
KILEVVNQVQDEERSLQSQERMSPLASTQSQRSALLSPEAPPEGGSSFLGQVLGFLATPFIKLFQLIYYL
VTAVLRNIVHLLWLVAKQAINTVESCLYHLGEATVSYLVAIGQELVSIPWKVLKVVAKVIRAFLRILCCL
LKAVCRALSIPLRVLVDVATFPVYTVGAIPIVCKDIAVGLGGTLSLLFDTAFGTVGGLFQIVFSVFKRIG
YKVTLDNSGEF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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