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Report for CCDS22813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22813.1 Public Mus musculus 9 Cfap300 23 108 98 CCDS HistoryNCBI Gene:234912Re-query CCDS DB by CCDS ID:22813.1Re-query CCDS DB by GeneID:234912See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065291.1 ENSMUSP00000063450.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065291.1Link to Ensembl Protein Viewer:ENSMUSP00000063450.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000065291Re-query CCDS DB by Protein ID:ENSMUSP00000063450
Original member Current member NCBI NM_199017.3 NP_950182.1 Accepted alive Link to Nucleotide Sequence:NM_199017.3Link to Protein Sequence:NP_950182.1Re-query CCDS DB by Nucleotide ID:NM_199017Re-query CCDS DB by Protein ID:NP_950182Link to BLAST:NP_950182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950182.1 267 Q8CC70 267 100% 0 0

Chromosomal Locations for CCDS 22813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 8022416 8022544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8023900 8023966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8025962 8026134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8027101 8027267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8037460 8037535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8042409 8042490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8042670 8042779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGCGGCTGGGGAGCCACGGGATGGAGGCGGCTACTACTTCAGATTCCTGCCTCATAGAACCTTCTCGT
CGCTGAGCGCCCGGGAGATCACCAGCCGCCTCCGCCAGTGGTCCATGCTGGGCAGAATCCAGGCGCAGGC
GTTCAGCTTCGACCAGACGTTCCAGCCCTACCAAAAGGATGATTTTGTCATGGCTTTTTTCAAAGACCCA
AATGTTATTCCAAATTTGCAGTTACTCTCAGATTCTTCTGGACAGTGGACCACATTAGGATCTGAAGTGA
AAAAAATTGAAGCTATAAATGTTCCATGCACACAACTTTCAATGTCATTTTTCCAACGCTTATACGATGA
AAATATTGTACGAGAAAGTGGACACATTGTCAAATGCCTAGATTCTTTCTGTGATCCGTTTCTCATTTCA
GACGAACTGAGAAAAGTTTTGCTCATGGAAGACTCTGAAAAATATGAAGTCTTTAGCCCAGTGGAAAGGG
AAGAGTTTCTGTTCTGTCTTTTTAAGCATCTCTGCCTCGGAGGGTCCCTTTGTCAGTATGAAGATGTGCT
AAAGCCATATCTGGAGACAGCTAAGCTGATCTATAAGGATCTGGTGAGTGTTCGGAAACATCCTCGAACC
AAGGAAATACAAATTACCTCTTCTGTCTTTAAAGTAAAAGCCTACGACTCTGTTGGTGTGTGCTACCCTT
CACCTAAAGAGCATGAGCAGACATTCTCGTATTTTGTTGTGGACCCCATCAAGCGTCATGTGAATGTCCT
GTACCACTGCTATGGTGTAGGGCACATGGCTTAG

Translation (267 aa):
MAAGEPRDGGGYYFRFLPHRTFSSLSAREITSRLRQWSMLGRIQAQAFSFDQTFQPYQKDDFVMAFFKDP
NVIPNLQLLSDSSGQWTTLGSEVKKIEAINVPCTQLSMSFFQRLYDENIVRESGHIVKCLDSFCDPFLIS
DELRKVLLMEDSEKYEVFSPVEREEFLFCLFKHLCLGGSLCQYEDVLKPYLETAKLIYKDLVSVRKHPRT
KEIQITSSVFKVKAYDSVGVCYPSPKEHEQTFSYFVVDPIKRHVNVLYHCYGVGHMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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