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Report for CCDS22770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22770.1 Reviewed, update pending Mus musculus 8 Pgbd5 23 108 98 CCDS HistoryNCBI Gene:209966Re-query CCDS DB by CCDS ID:22770.1Re-query CCDS DB by GeneID:209966See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052580.9 ENSMUSP00000054788.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052580.9Link to Ensembl Protein Viewer:ENSMUSP00000054788.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000052580Re-query CCDS DB by Protein ID:ENSMUSP00000054788
Original member Current member EBI ENSMUST00000136892.2 ENSMUSP00000123265.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136892.2Link to Ensembl Protein Viewer:ENSMUSP00000123265.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000136892Re-query CCDS DB by Protein ID:ENSMUSP00000123265
Original member NCBI NM_171824.2 NP_741958.1 Updated not alive Link to Nucleotide Sequence:NM_171824.2Link to Protein Sequence:NP_741958.1Re-query CCDS DB by Nucleotide ID:NM_171824Re-query CCDS DB by Protein ID:NP_741958
Current member NCBI NM_171824.3 NP_741958.2 Pending alive Link to Nucleotide Sequence:NM_171824.3Link to Protein Sequence:NP_741958.2Re-query CCDS DB by Nucleotide ID:NM_171824Re-query CCDS DB by Protein ID:NP_741958Link to BLAST:NP_741958.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_741958.2 523 D3YZI9-1 523 100% 0 0

Chromosomal Locations for CCDS 22770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124370491 124370686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124371852 124371957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124374246 124374443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124376110 124376290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124380184 124380318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124384195 124384608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCCACCCAGCGCTAGCGCGGTGGACTTCTTCCAGCTCTTCGTCCCGGACAACGTGCTCAAGAACATGG
TGGTACAGACCAACATGTATGCCAGGAAGTTCCAGGAGCGGTTTGGCAGTGACGGTGCCTGGGTGGAGGT
GACGTTGGCAGAGATGAAGGCCTTCCTGGGCTATGTGATCTCCACCAGCGTCTCGCACTGTGAGTCGGTA
CTCAGCATTTGGAGCGGAGGCTTCTATAGCAACCGGAGCCTTGCCCTCGTCATGAGCCAGGCCCGCTTCG
AGAAAATCCTCAAGTACTTCCATGTTGTGGCCTTCCGATCCAGCCAGACCACGCATGGGCTCTACAAGGT
CCAGCCCTTCCTCGACTCCCTGCAGAGTGGCTTTGATGCTGCTTTCAGGCCGTCTCAGACCCAGGTGCTA
CATGAACCCCTGATTGACGAGGACCCTGTGTTCATTGCCACGTGCACGGAGCGAGAGCTGCGGAAGAGGA
AAAAGCGGAAATTCAGCCTGTGGGTCCGCCAGTGCTCTTCAACCGGGTTCATCATCCAGATCTACGTCCA
CCTAAAGGAAGGTGGTGGCCCAGATGGCCTGGACGCTCTGAAGAACAAGCCACAGCTGCACAGCATGGTG
GCCCGGAGCCTGTGCCGGAACGCGGCCGGAAAGAACTATATCATCTTTACAGGGCCCAGCATCACCAGCC
TCAATCTGTTCGAAGAATTTGAGAAGCAAGGGATCTACTGCTGTGGCCTCCTCAGCTCTAGGAAGAGTGA
CTGCACAGGTCTCCCTCCATCCATGTTGACCAACCCTGCCACCCCACTCGCCCGGGGCCAGCACCAGATC
AGGACAAAGGGCAACATGTCACTGATCTGCTGGTACAACAAGGGGCACTTCCGCTTCCTGACCAACGCCT
ACTCCCCTGTGCAGAAAGGCGTCATCATCAAGAGGAGGAGTGGGGAAATCCCCTGCCCTCTGGCCGTGGA
GGCCTTTGCGGCTCACCTCAGCTACATCTGCAGATATGACGATAAGTACAGCAAGTATTTCATCTCTCAC
AAGCCAAACAAGACGTGGCAGCAAGTGTTCTGGTTCGCCATCAGCATCGCCGTCAACAACGCCTACATCC
TGTACAAAATGTCAGACGCCTACCACGTGAAGAAGTACAGCCGGGCACAGTTCGGAGAGAGACTTGTCAG
GGAGTTGCTGGGCTTGGAGGACTCATCGCCAGCCCACTGA

Translation (409 aa):
MPPSASAVDFFQLFVPDNVLKNMVVQTNMYARKFQERFGSDGAWVEVTLAEMKAFLGYVISTSVSHCESV
LSIWSGGFYSNRSLALVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQSGFDAAFRPSQTQVL
HEPLIDEDPVFIATCTERELRKRKKRKFSLWVRQCSSTGFIIQIYVHLKEGGGPDGLDALKNKPQLHSMV
ARSLCRNAAGKNYIIFTGPSITSLNLFEEFEKQGIYCCGLLSSRKSDCTGLPPSMLTNPATPLARGQHQI
RTKGNMSLICWYNKGHFRFLTNAYSPVQKGVIIKRRSGEIPCPLAVEAFAAHLSYICRYDDKYSKYFISH
KPNKTWQQVFWFAISIAVNNAYILYKMSDAYHVKKYSRAQFGERLVRELLGLEDSSPAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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