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Report for CCDS22650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22650.1 Public Mus musculus 8 Psmd7 23 108 98 CCDS HistoryNCBI Gene:17463Re-query CCDS DB by CCDS ID:22650.1Re-query CCDS DB by GeneID:17463See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044106.5 ENSMUSP00000041968.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044106.5Link to Ensembl Protein Viewer:ENSMUSP00000041968.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044106Re-query CCDS DB by Protein ID:ENSMUSP00000041968
Original member Current member NCBI NM_010817.2 NP_034947.1 Accepted alive Link to Nucleotide Sequence:NM_010817.2Link to Protein Sequence:NP_034947.1Re-query CCDS DB by Nucleotide ID:NM_010817Re-query CCDS DB by Protein ID:NP_034947Link to BLAST:NP_034947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034947.1 321 P26516 321 100% 0 0

Chromosomal Locations for CCDS 22650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 107580884 107581319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107582382 107582473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107584173 107584253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107584863 107584960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107585705 107585797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107586625 107586716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107588279 107588352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGCCGGAGCTGGCGGTGCAGAAGGTGGTGGTTCACCCCCTGGTGCTGCTCAGTGTGGTGGATCATTTCA
ACCGAATTGGCAAGGTTGGAAACCAGAAGCGGGTAGTTGGTGTGCTTTTGGGATCATGGCAAAAGAAAGT
ACTTGATGTATCCAACAGTTTTGCAGTACCTTTTGATGAAGATGACAAAGATGATTCTGTCTGGTTTTTA
GACCATGATTATTTGGAAAACATGTATGGGATGTTCAAGAAGGTCAATGCCAGAGAAAGGATAGTTGGGT
GGTACCACACAGGCCCCAAACTGCACAAGAATGATATCGCCATCAATGAACTCATGAAGAGATACTGCCC
CAACTCAGTATTGGTCATTATCGACGTGAAGCCAAAGGACCTAGGACTTCCCACCGAAGCCTACATCTCA
GTGGAGGAAGTTCATGACGATGGGACGCCAACGTCAAAAACTTTTGAGCATGTGACTAGCGAGATTGGAG
CAGAGGAGGCGGAGGAAGTCGGAGTGGAGCACTTACTAAGAGACATCAAGGACACTACAGTGGGGACTCT
CTCCCAGCGGATCACAAACCAGGTCCATGGCTTGAAGGGACTGAACTCCAAGCTCCTGGATATCAGGAGC
TACCTGGAGAAGGTAGCCAGCGGCAAGCTGCCCATCAACCACCAGATCATATACCAGCTGCAGGACGTCT
TCAACCTGCTGCCGGACGCCAGCCTGCAGGAGTTTGTCAAGGCCTTCTACCTGAAGACCAATGACCAGAT
GGTGGTGGTGTACCTGGCCTCGCTGATCCGCTCTGTGGTCGCCTTGCATAACCTCATCAACAACAAGATT
GCCAACCGGGATGCCGAGAAGAAGGAGGGACAGGAAAAGGAGGAGAGCAAGAAGGAGAGAAAAGACGACA
AAGAGAAGGAGAAGAGCGACGCAGCGAAGAAAGAAGAGAAAAAGGAGAAAAAGTAA

Translation (321 aa):
MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFL
DHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYIS
VEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRS
YLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKI
ANRDAEKKEGQEKEESKKERKDDKEKEKSDAAKKEEKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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