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Report for CCDS22614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22614.1 Public Mus musculus 8 Tsnaxip1 23 108 98 CCDS HistoryNCBI Gene:72236Re-query CCDS DB by CCDS ID:22614.1Re-query CCDS DB by GeneID:72236See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034365.4 ENSMUSP00000034365.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034365.4Link to Ensembl Protein Viewer:ENSMUSP00000034365.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034365Re-query CCDS DB by Protein ID:ENSMUSP00000034365
Original member Current member NCBI NM_024445.4 NP_077765.1 Accepted alive Link to Nucleotide Sequence:NM_024445.4Link to Protein Sequence:NP_077765.1Re-query CCDS DB by Nucleotide ID:NM_024445Re-query CCDS DB by Protein ID:NP_077765Link to BLAST:NP_077765.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077765.1 704 Q99P25 704 100% 0 0

Chromosomal Locations for CCDS 22614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105827787 105827827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105833459 105833540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105837146 105837258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105837406 105837532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105838707 105838800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105839991 105840187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105840558 105840693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105841394 105841563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105841646 105841805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105841882 105842012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105842132 105842257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105842397 105842549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105842673 105842782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105843891 105844017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105844111 105844217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105844384 105844624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGGCCAACCTACAGGAGCGTAAAAGTTTCTCCAAGCCAAGAATAAGTATACAAGCTTCAGGAGGGACTC
CGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACACTGCCCTTGCAGTTATCCTT
GGGTGGCCACCTGTCACCATGGCCTACATACACCAGTGGCCAGACAGTTCTACATAATCGAAAGCCCTGT
TCAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACC
TGGAGCAACTAGAAAACTACCTGCGCAAGGAACTCCTCCTGCTGGACCTGAGCACGGATTCTGCACAGGA
ACTGAGGCTGCAGCCTTATAGGGAGATCTTTGAGTTCTTCATAGAGGATTTCAAGACATACAAGCCACTG
TTATCCTCCATCAAGAATGCGTACGAGGTGATGCTAGCCCACCAAAAGGAGAGAATCCGGTCCCTGGAGC
CCCTGAAGGCCAAGATTGTCACCATGAACGAGGACTGCAGTGAGAGGGTCCTGGCCATGAGGGCTGAGGA
GAGGTACGAAATCTCTGTGCTCAAGAAAGAGAAGATGAATTTGCTAAAACTCATCGACAAAAAGAACGAA
GAGAAGATCTCACTGCAGAGCGAGGTAGCTAAACTGAGGAGGAGCCTGGCTGAGGAGTATCTGCGTTATC
TTACCGAACGAGATGCCCGCAAAATTCTGATTGGGGACCTGAATGAACTGAGGTACCAGCAAGAAGACAT
GTCACTAGCCCAGACCCCAGGTGTTTGGGGAGAAGACCCAGTGAAGCTAACATTGGCACTGAAGATGACT
CGACAAGACCTGACTCGCACACAGATGGAACTTAACACAATGAAAGCCAACTCTGGAGATGTGGTACCCA
GGAGAGACTTGGAAATGCAAGAGAAGACCAACATGGAGCTTCAAGAGCAGCTAGAAAGCCTGAAAGCCGA
CTATGAAGAAGTCCAAAAGGAACACGAGCTGCTGCTGCAGTTGCACATGAGCACACTAAAGGAGCGGGAC
CAGTTCTATAATGAGTTGCAGGAGATCCAGCGCACCTCCACACCGCGACCTGACTGGACCAAATGCGAAA
GTATCATAGCAGGGGGCCCAGAGCGCTGGCTAGTGCTGGCTGAAGGAAAGAACAGTGATCAGCTGGTGGA
TGTGCTCCTGGAGGAAATCGGCATGGGTCTGCTTCGGGAGAAAGACTTCTTCCCTGGCCTGGGCTTTGGG
GATGCCATCCCCCCCTTCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAGCCAAGCAAGAAGGAGGTGG
TAAACCTCCTTAAGGATGCCTGGAAGGAACGCATTGCAGAGGAACAGAAGGAGCCATTTCCAGATTTCTT
CTTCAATTTTCTGGAGCGTCGCTTTGGGGTCAATGATGCCATGGCCTGGGCTTACACCATTTTTGAAAAT
ATCAAGCTCTTTCGTTCCAGTGAGATCATGAATCAGTTCTATGCAGTATTGATGGGAAAGAATTTGGAGA
GTGTATATATCAATCAAAAAAAGACACTGTCCCATCTGCTGAAGGAGTTGCTAAGTGTTGACACTCAGAA
TGAGGGATCAATCACCATGGAACAGTTCAGCACCATCCTCAAGACCACCTTTCCTCTCAAGAAGGAAGAG
CAGATTCAGGAGCTGATGGAGGCAGTAGGCTGGGGTCCAGACAGCAGCAACACAGACATGTTAAACTACC
GATCTTTGTTTAATGAGGATGAGGAAGGGCAGAGTGAGCCATTTGTGCAGAGGCTGTGGGAACAGTATGA
AAGTGACAAGGAAGCATACTTAGAGGAACTGAAGCAGGAGCTAGACCTGGATCCTCTTGAAGACGTGACC
CTACTGAAGATGCGTGGGACCCTGATGAACATAGATCCTACCATGGACAAGCAGACTCTGAGTGCCTACC
TGAGCCAGGCCTATCAGATCCCTGCAATTGATGTGCCACTGGAGGATGAGGAGAAGCAGGGGATAATCTC
CATAAAGGTTGAGACTGCACTTGATCGACTTAGGATGGCAGACACGAAGCGTGTAGGACCACGAGAGCCA
GACCCAGCAAGCTAG

Translation (704 aa):
MANLQERKSFSKPRISIQASGGTPEAKGIEKRKLSQKRRTLPLQLSLGGHLSPWPTYTSGQTVLHNRKPC
SDDSRNRANSCQQQSMSISKPKYLEQLENYLRKELLLLDLSTDSAQELRLQPYREIFEFFIEDFKTYKPL
LSSIKNAYEVMLAHQKERIRSLEPLKAKIVTMNEDCSERVLAMRAEERYEISVLKKEKMNLLKLIDKKNE
EKISLQSEVAKLRRSLAEEYLRYLTERDARKILIGDLNELRYQQEDMSLAQTPGVWGEDPVKLTLALKMT
RQDLTRTQMELNTMKANSGDVVPRRDLEMQEKTNMELQEQLESLKADYEEVQKEHELLLQLHMSTLKERD
QFYNELQEIQRTSTPRPDWTKCESIIAGGPERWLVLAEGKNSDQLVDVLLEEIGMGLLREKDFFPGLGFG
DAIPPFLRFDGPVKNKKPSKKEVVNLLKDAWKERIAEEQKEPFPDFFFNFLERRFGVNDAMAWAYTIFEN
IKLFRSSEIMNQFYAVLMGKNLESVYINQKKTLSHLLKELLSVDTQNEGSITMEQFSTILKTTFPLKKEE
QIQELMEAVGWGPDSSNTDMLNYRSLFNEDEEGQSEPFVQRLWEQYESDKEAYLEELKQELDLDPLEDVT
LLKMRGTLMNIDPTMDKQTLSAYLSQAYQIPAIDVPLEDEEKQGIISIKVETALDRLRMADTKRVGPREP
DPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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