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Report for CCDS22590.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22590.2 Public Mus musculus 8 Ces3b 23 108 98 CCDS HistoryNCBI Gene:13909Re-query CCDS DB by CCDS ID:22590.2Re-query CCDS DB by GeneID:13909See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22590.2
The coding region has been updated to start at an alternate in-frame start codon which appears to be rodent-specific, and results in a protein that is 3 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22590.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093221.12 ENSMUSP00000090909.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093221.12Link to Ensembl Protein Viewer:ENSMUSP00000090909.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093221Re-query CCDS DB by Protein ID:ENSMUSP00000090909
Original member Current member NCBI NM_144511.2 NP_653094.2 Accepted alive Link to Nucleotide Sequence:NM_144511.2Link to Protein Sequence:NP_653094.2Re-query CCDS DB by Nucleotide ID:NM_144511Re-query CCDS DB by Protein ID:NP_653094Link to BLAST:NP_653094.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653094.2 571 Q8VCU1-1 571 100% 0 0

Chromosomal Locations for CCDS 22590.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105083775 105083865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105084945 105085149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105085257 105085395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105085556 105085689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105086558 105086711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105086822 105086926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105088419 105088511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105088607 105088747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105090704 105090784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105091511 105091658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105092605 105092754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105092895 105092973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105093067 105093262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGACAAATATGAGGACAATGATACCAGCTGGGTCCAGTGTCCTAGTCTGGGTGACCTGTCTGCTCCTGG
CATTTGTTACCACAGTCACTGGACCCAAAGTCATTCAGCCTGAAGTGGATACCCCCCTGGGTCGTGTTCG
AGGCCGGCAGGTGGGTGTGAAGGACACAGACCGCATGGTAAATGTCTTCCTGGGCATCCCCTTTGCTCAA
GCACCAGTGGGACCTCTTCGGTTCTCAGCTCCACTCCCACCACAGCCCTGGGAAGGTGTGAGAGATGCCA
GCATCAATCCCCCAATGTGCCTTCAGGATGTAGAGAAAATGATCAACAGCAGATTTGGCCTCAATGAAAA
GATTAAAATCTTCCCCATTTCTGAGGACTGCCTGACCCTCAACATCTACAGCCCCACTGAGATCACTGCA
GGGGACAAAAGGCCGGTCATGGTATGGATCCACGGAGGCTCTCTGCTGGTTGGCTCCTCCACATCTCAGG
ATGGATCAGCACTGGCCGCGTACGGGGATGTGGTAGTTGTCACTGTCCAGTATCGCCTTGGGATCTTTGG
CTTCCTCAGCACTGGAGACAAGCACATGCCAGGCAACAGGGGATTCCTGGATGTGGTGGCTGCTCTTCGC
TGGGTCCAGGGGAACATAGCCCCCTTTGGGGGTGATCCCAACTGTGTCACTATCTTCGGTAACTCTGCTG
GAGGCATGATTGTCTCATCCCTGTTCCTGTCTCCAATATCTGCTGGGCTCTTCCACAGAGCCATATCCCA
GAGTGGGATTGTCACGACCATTATGATGGAAGACATGAAACCATGGCCTGAAGCTCAGAACTTTGCCAAT
TCTGTGGCCTGTGGCTCTGCATCCCCAGCTGAGCTGGTCCAGTGTTTGCTGCAGAAGGAAGGAAAGGACC
TTATCAAGCAGAAAAACGTGAACATTTCCTACATAGTCAATGACTCCTTCTTCCCACAAAGGCCAGAGAA
GCTCCTAGCAGACCAGCAATTCCCCACTGTGCCCTACCTTTTGGGAGTCACCAACCATGAATTTGGCTGG
CTTCTACTCAAATCCTTGAATATCCTGGATAAGTTGGAACATCTGAGCCGGGAAGACCTGTTGGAGATTT
CACGGCCCTTCTTGGCCATTATGGAAGTGCCCCCTGAGATCATGCCCACTGTCATCGATGAATACCTAGA
CAATGGCTCAGATCAATCAGCTACAAGGTATGCCTTCCAGGAATTGCTGGGTGATATCTCGTTCATCATT
CCTACCTTGAACTTCTCAAAATACCTTCGAGATGCTGGGTGCCCTGTTTTCTTGTACGAGTTCCAGCATA
CACCCAGTTCTTTTGCAAAGTTCAAGCCAGCCTGGGTGAAGGCTGACCATGCGTCTGAGAATTCCTTTGT
TTTTGGAGGTCCTTTCCTCACTGATGAGAGTTCCCTTCTGGCCTTCCCAGAGGCCACAGAGGAAGAGAAG
CAGCTGAGCCTGACCATGATGGCCCAATGGAGCCAGTTTGCACGCACAGGAAACCCCAATGGCAAGGGGC
TGCCTCCTTGGCCCCAATTAAACCAGTTAGAACAATACTTGGAGATTGGTCTAGAATCACGGACTGGGGT
GAAGCTAAAGAAGGGTCGGCTACAGTTCTGGACAGAGACACTGCCAAGAAAAATTCAAGAATGGCACCGA
GAGCAGAGAAGCAGGAAAGTTCCAGAGGAGCTCTGA

Translation (571 aa):
MTNMRTMIPAGSSVLVWVTCLLLAFVTTVTGPKVIQPEVDTPLGRVRGRQVGVKDTDRMVNVFLGIPFAQ
APVGPLRFSAPLPPQPWEGVRDASINPPMCLQDVEKMINSRFGLNEKIKIFPISEDCLTLNIYSPTEITA
GDKRPVMVWIHGGSLLVGSSTSQDGSALAAYGDVVVVTVQYRLGIFGFLSTGDKHMPGNRGFLDVVAALR
WVQGNIAPFGGDPNCVTIFGNSAGGMIVSSLFLSPISAGLFHRAISQSGIVTTIMMEDMKPWPEAQNFAN
SVACGSASPAELVQCLLQKEGKDLIKQKNVNISYIVNDSFFPQRPEKLLADQQFPTVPYLLGVTNHEFGW
LLLKSLNILDKLEHLSREDLLEISRPFLAIMEVPPEIMPTVIDEYLDNGSDQSATRYAFQELLGDISFII
PTLNFSKYLRDAGCPVFLYEFQHTPSSFAKFKPAWVKADHASENSFVFGGPFLTDESSLLAFPEATEEEK
QLSLTMMAQWSQFARTGNPNGKGLPPWPQLNQLEQYLEIGLESRTGVKLKKGRLQFWTETLPRKIQEWHR
EQRSRKVPEEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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