NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22540.1 Public Mus musculus 8 Nup93 23 108 98 CCDS HistoryNCBI Gene:71805Re-query CCDS DB by CCDS ID:22540.1Re-query CCDS DB by GeneID:71805See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079961.13 ENSMUSP00000078878.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079961.13Link to Ensembl Protein Viewer:ENSMUSP00000078878.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079961Re-query CCDS DB by Protein ID:ENSMUSP00000078878
Original member Current member EBI ENSMUST00000109547.1 ENSMUSP00000105174.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109547.1Link to Ensembl Protein Viewer:ENSMUSP00000105174.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109547Re-query CCDS DB by Protein ID:ENSMUSP00000105174
Original member Current member EBI ENSMUST00000212824.1 ENSMUSP00000148700.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212824.1Link to Ensembl Protein Viewer:ENSMUSP00000148700.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212824Re-query CCDS DB by Protein ID:ENSMUSP00000148700
Original member NCBI NM_001357266.1 NP_001344195.1 Updated not alive Link to Nucleotide Sequence:NM_001357266.1Link to Protein Sequence:NP_001344195.1Re-query CCDS DB by Nucleotide ID:NM_001357266Re-query CCDS DB by Protein ID:NP_001344195
Current member NCBI NM_001357266.2 NP_001344195.1 Accepted alive Link to Nucleotide Sequence:NM_001357266.2Link to Protein Sequence:NP_001344195.1Re-query CCDS DB by Nucleotide ID:NM_001357266Re-query CCDS DB by Protein ID:NP_001344195Link to BLAST:NP_001344195.1
Original member NCBI NM_172410.3 NP_765998.1 Updated not alive Link to Nucleotide Sequence:NM_172410.3Link to Protein Sequence:NP_765998.1Re-query CCDS DB by Nucleotide ID:NM_172410Re-query CCDS DB by Protein ID:NP_765998
Current member NCBI NM_172410.4 NP_765998.1 Accepted alive Link to Nucleotide Sequence:NM_172410.4Link to Protein Sequence:NP_765998.1Re-query CCDS DB by Nucleotide ID:NM_172410Re-query CCDS DB by Protein ID:NP_765998Link to BLAST:NP_765998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344195.1 819 Q8BJ71-1 819 100% 0 0
NP_765998.1 819 Q8BJ71-1 819 100% 0 0

Chromosomal Locations for CCDS 22540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94227677 94227855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94243654 94243771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94281271 94281333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94286489 94286617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94292668 94292742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94295021 94295110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94296450 94296589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94300760 94300892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94302068 94302225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94303600 94303765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94304160 94304253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94305240 94305431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94306025 94306151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94306274 94306346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94306602 94306646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94307841 94307957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94308904 94309022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94309588 94309705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94310299 94310382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94311533 94311661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94314585 94314695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGGATACTGAGGGGTTTGGTGAGCTCCTTCAGCAAGCTGAACAGCTTGCTGCTGAGACTGAAGGCATCT
CTGAGCTTCCACATGTAGAACGAAATTTACAGGAGATCCAGCAAGCTGGTGAGCGCCTGCGTTCCCGTAC
CCTCACACGCACATCCCAGGAGACAGCAGATGTCAAGGCATCAGTTCTTCTCGGGTCAAGGGGACTTGAC
ATATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCGAGCCTGTGA
AGGACACGGACATTCAGGGCTTCCTGAAGAATGAGAAAGATAATGCCTTGTTGTCTGCTATTGAAGAGTC
CCGGAAGAGGACCTTTGGCATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTG
AAACAAAGGATTCTGCACACACTGCTGGCGTCGGGAGAGGATGCCCTTGACTTCACCCAAGAAAGTGAGC
CGAGTTACATCGGTGATGTGAATCCCCCTGGGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATGCCCG
GCAGATCTATATCTATAACGAGAAGATTGTGAGTGGACACCTACAGCCTAACCTGGTGGACCTGTGTGCC
TCTGTCGCAGAGCTGGATGACAAGAGCATTTCTGACATGTGGGCCATGGTAAAACAAATGACAGATGTGG
TGCTGACACCAGCAACTGACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTATGGACTTTGTCAAGCA
AGCCTTGGGATATCTTGAGCAGAGTTATAAGAATTACACCCTTGTGACTGTCTTCGGAAATCTGCATCAG
GCACAGCTGGGCGGTGTGCCTGGGACTTACCAGCTGGTTCGGAGTTTCCTAAACATTAAACTGCCAGCTC
CTTCACCAGGACTTCAGGATGGAGAGGTAGAAGGCCATCCTGTCTGGGCATTAATTTATTACTGCATGCG
CTGTGGAGACCTGCTTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACT
TGGTTCCAGGAGTACATGAACAGCAAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAACTCCGACTTC
ACTACCGCAGAGCCCTCAGGAACAACACAGACCCCTACAAGAGAGCTGTGTACTGTATTATTGGGAGATG
CGATATCACCGACAATCAGAGTGAAGTAGCCGACAAGACTGAGGACTACCTATGGTTAAAATTGAACCAG
GTGTGTTTTGATGATGACGGCACCAGCTCACCACAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAGC
TGCTAGAAGACTATGGCGAGTCCCACTTCACGGTGAACCAGCAGCCCTTCCTCTACTTTCAAGTGCTGTT
CCTGACTGCACAGTTTGAAGCTGCCATTGCCTTCCTCTTCCGCATGGAGCGGCTGCGCTGCCATGCTGTC
CATGTGGCCCTGGTGCTGTTTGAGCTAAAGCTGCTTTTAAAGTCCTCTGGACAGAGTGCTCAACTCCTCA
GCCACGAGCCTGGCGACCCTCCCTGCATGCGACGGCTGAACTTTGTGCGTCTGCTCATGCTCTACACCCG
CAAGTTTGAGTCCACGGACCCAAGAGAAGCCCTCCAGTACTTTTACTTCCTCAGGGATGAGAAAGACAGT
CAAGGAGAAAACATGTTTCTGCGCTGTGTGAGCGAGCTTGTGATAGAAAGTCGAGAGTTTGATATGATTC
TTGGAAAACTAGAGAACGATGGAAGTAGAAAGCCTGGAGTTATAGATAAGTTTACCAGTGACACAAAGCC
TATTATCAACAAAGTTGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGAGGCAGCGAAGCTTTATGAC
CTTGCTAAGAATGCTGACAAGGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGTTGTCCCACAGATCA
GCGCCCCACAGTCTAACAAAGAAAGGCTGAAGAACATGGCCCTCTCCATTGCGGAGAGGTACAGAGCTCA
GGGAATAAGTGCAAATAAGTTTGTGGACTCTACATTCTATCTCCTCTTGGACCTGATCACCTTTTTTGAC
GAGTATCACAGTGGTCATATTGACAGAGCCTTTGATATTATTGACCGCTTGAAGCTGGTGCCTCTGAATC
AGGAGAGTGTGGAAGAAAGGGTGGCTGCCTTCAGAAACTTCAGTGATGAAATCAGACACAACCTCTCAGA
AGTTCTTCTCGCCACCATGAACATCCTGTTCACACAGTTTAAGAGGCTCAAAGGAACAAGTCCATCTTCA
GCAACCAGGCCCCAGCGAGTCATTGAAGACCGTGACTCTCAACTCCGAAGTCAAGCCAGAGCCCTGATTA
CCTTTGCTGGGATGATACCGTACCGGACGTCGGGGGACACTAATGCCAGGCTGGTGCAGATGGAGGTCCT
CATGAATTAA

Translation (819 aa):
MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLD
ISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQV
KQRILHTLLASGEDALDFTQESEPSYIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCA
SVAELDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQ
AQLGGVPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQLGEFKT
WFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSEVADKTEDYLWLKLNQ
VCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAIAFLFRMERLRCHAV
HVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDS
QGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYD
LAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFD
EYHSGHIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSS
ATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH