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Report for CCDS22516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22516.1 Public Mus musculus 8 Tox3 23 108 98 CCDS HistoryNCBI Gene:244579Re-query CCDS DB by CCDS ID:22516.1Re-query CCDS DB by GeneID:244579See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109621.9 ENSMUSP00000105250.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109621.9Link to Ensembl Protein Viewer:ENSMUSP00000105250.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109621Re-query CCDS DB by Protein ID:ENSMUSP00000105250
Original member NCBI NM_172913.3 NP_766501.2 Updated not alive Link to Nucleotide Sequence:NM_172913.3Link to Protein Sequence:NP_766501.2Re-query CCDS DB by Nucleotide ID:NM_172913Re-query CCDS DB by Protein ID:NP_766501
Current member NCBI NM_172913.4 NP_766501.2 Accepted alive Link to Nucleotide Sequence:NM_172913.4Link to Protein Sequence:NP_766501.2Re-query CCDS DB by Nucleotide ID:NM_172913Re-query CCDS DB by Protein ID:NP_766501Link to BLAST:NP_766501.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766501.2 575 Q80W03 575 100% 0 0

Chromosomal Locations for CCDS 22516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 90248274 90249017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90252652 90252732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90254275 90254502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90257875 90258144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90270229 90270483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90274632 90274694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90347863 90347949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGATGTGAGGTTCTACCCCGCGGCGGCCGGGGACCCAGCCGGCCTGGACTTCGCGCAGTGCCTGGGGT
ACTACGGCTACAGCAAGTTGGGAAATAATAACTACATGAACATGGCCGAGGCAAACAACGCCTTCTTTGC
TGCCAGTGAGCAGACATTCCACACGCCAAGCCTTGGGGACGAAGAGTTTGAAATTCCACCGATCACGCCT
CCTCCAGAGTCAGACCCCACCCTGGGTATGCCTGATGCACTGCTACCCTTTCAGACTCTCAGCGATCCGT
TGCCTTCCCAGGGAACTGAGTTCACACCCCAGTTTCCCCCTCAAAGCCTGGATCTCCCTTCCATCACAAT
CTCAAGGAATCTGGTGGAGCAAGATGGCGTGCTTCATAGCAATGGGCTGCACATGGATCAGAGCCACACA
CAAGTGTCACAGTACCGCCAGGATCCCTCTTTGGTCATGAGGTCAATTGTCCATATGACGGATGGTGCTC
GATCTGGGATCATGCCTCCTGCCCAGCTGACCACCATCAACCAGTCTCAGCTCAGCGCACAGCTGGGCTT
GAATTTGGGAGGAGCCAATGTGTCCCACACATCTCCTTCACCTCCAGCAAGCAAATCAGCCACTCCCTCT
CCTTCCAGCTCTATCAACGAAGAGGATGCTGATGATGCAAACAGAGCCATTGGAGAGAAAAGAACAGCCC
CAGATTCTGGCAAGAAGCCCAAGACTCCAAAGAAAAAGAAAAAGAAAGATCCCAACGAGCCTCAGAAGCC
AGTGTCAGCATATGCCCTGTTTTTCAGAGATACACAGGCTGCAATTAAGGGTCAAAACCCCAACGCAACC
TTCGGAGAAGTCTCGAAAATCGTAGCATCTATGTGGGACAGCCTTGGGGAGGAGCAAAAGCAGGTATATA
AAAGGAAAACAGAAGCTGCCAAGAAAGAATACTTGAAGGCCCTGGCTGCCTACCGGGCTAGCCTCGTTTC
CAAGGCTGCTGCTGAATCTGCAGAAGCCCAGACCATCCGTTCTGTCCAGCAGACTCTGGCATCAACCAAC
CTGACATCCTCCCTCCTCCTGAACACATCACTGTCTCAACATGGGACAGTCCCAGCCTCACCTCAGACTC
TTCCACAGTCACTCCCTAGGTCAATTGCCCCCAAACCCTTAACCATGAGACTACCCATGAGCCAGATCGT
CACATCAGTCACCATTGCAGCCAACATGCCCTCGAACATTGGGGCTCCACTGATAAGTTCCATGGGGACG
ACCATGGTTGGTTCAGCAACCTCCACCCAGGTGAGCCCTTCGGTGCAAACCCAGCAGCATCAGATGCAGT
TGCAGCAGCAACAGCAGCAGCAGCAGCAGATGCAGCAGATGCAGCAGCAGCAGTTACAGCAGCACCAAAT
GCATCAGCAGATCCAGCAGCAGATGCAGCAGCAGCATTTTCAGCATCACATGCAGCAGCACCTGCAGCAG
CAGCAACAGCAGCATCTCCAGCAGCAGCTCAGCCAACAGCAGCTGCAGCAGCAGTTGCAGCAGCATCTCC
AGCTGCAGCAACTGCAGCACATGCAGCACCAGTCTCAGCCTTCTCCCCGGCAGCACTCGCCCGTCACCTC
ACAGATCACGTCCCCCATCCCCGCCATTGGCAGCCCCCAGCCAGCCTCTCAGCAGCACCAGCCTCAAATC
CAGTCGCAGACTCAGACTCAAGTGTTACCGCAGGTCAGTATTTTCTAA

Translation (575 aa):
MDVRFYPAAAGDPAGLDFAQCLGYYGYSKLGNNNYMNMAEANNAFFAASEQTFHTPSLGDEEFEIPPITP
PPESDPTLGMPDALLPFQTLSDPLPSQGTEFTPQFPPQSLDLPSITISRNLVEQDGVLHSNGLHMDQSHT
QVSQYRQDPSLVMRSIVHMTDGARSGIMPPAQLTTINQSQLSAQLGLNLGGANVSHTSPSPPASKSATPS
PSSSINEEDADDANRAIGEKRTAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT
FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTN
LTSSLLLNTSLSQHGTVPASPQTLPQSLPRSIAPKPLTMRLPMSQIVTSVTIAANMPSNIGAPLISSMGT
TMVGSATSTQVSPSVQTQQHQMQLQQQQQQQQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQQHLQQ
QQQQHLQQQLSQQQLQQQLQQHLQLQQLQHMQHQSQPSPRQHSPVTSQITSPIPAIGSPQPASQQHQPQI
QSQTQTQVLPQVSIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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