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Report for CCDS22391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22391.1 Public Mus musculus 8 Ocel1 23 108 98 CCDS HistoryNCBI Gene:77090Re-query CCDS DB by CCDS ID:22391.1Re-query CCDS DB by GeneID:77090See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002469.8 ENSMUSP00000002469.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002469.8Link to Ensembl Protein Viewer:ENSMUSP00000002469.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002469Re-query CCDS DB by Protein ID:ENSMUSP00000002469
Original member Current member NCBI NM_029865.2 NP_084141.2 Accepted alive Link to Nucleotide Sequence:NM_029865.2Link to Protein Sequence:NP_084141.2Re-query CCDS DB by Nucleotide ID:NM_029865Re-query CCDS DB by Protein ID:NP_084141Link to BLAST:NP_084141.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084141.2 219 Q8VCR9 219 99.0868% 0 2

Chromosomal Locations for CCDS 22391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71371675 71371985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71372468 71372633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71372749 71372802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71372946 71373074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGCAAATACATGCAGGTCCCGCCTCCAGGCGCGGCCGGCGGGGTCCTCTGGCCAGGCTCTCAGGCCCGG
AAGCCACTTGCAATTCGCGCCCTGCCGCCAGGGGGCGCCAGAGAGCTGCAGCCCCACGCATGCCTGCCCC
GGAGCGTCCGCGCTCCAGACGGCCGCAGAGCCAGCCCGGGCCGGGAGAGCTCTGCGTGAGGCCCCGGAAG
ATCGTGTTTGCGGATGAGCTGCGCCCCCGGGAGCCACTGCACCCTGAGAAGCATCCCAGAGATCTGGGAC
CCCGCCTCAACCCAGTACCTGACTACGAGCTTAAGTACCCACCAGTGACCAACAGAAGGGACCGGAGCCG
CTATGCCGCAGTGTTCCAGGACCAGTATGGCGAGTTCTCGGAGCTCCAGCGGGAGGTGGGGGCCACACAG
GCTAAGCTCCAGCAACTGGAGGCCCTGCTGCTGTCGCTGCCCCCGCCACGAAGCCAGAAGGAGGCTCGCA
TGGCAGCTCATGTCAGGAGAGAGTTTGAGAAGAAGCGAGGGGATCCTGGCTTCCTGGATAAGCAGGCTCG
CTGTAACTACCTGAAGGGTAAACTCAGGCACCTCAAGGCCCAGATCCGCAAATTTGATGACCAGCAGGAC
AGCAACAGTGAAGACTCTGTGTACTTCTGA

Translation (219 aa):
MQIHAGPASRRGRRGPLARLSGPEATCNSRPAARGRQRAAAPRMPAPERPRSRRPQSQPGPGELCVRPRK
IVFADELRPREPLHPEKHPRDLGPRLNPVPDYELKYPPVTNRRDRSRYAAVFQDQYGEFSELQREVGATQ
AKLQQLEALLLSLPPPRSQKEARMAAHVRREFEKKRGDPGFLDKQARCNYLKGKLRHLKAQIRKFDDQQD
SNSEDSVYF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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