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Report for CCDS22296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22296.1 Public Mus musculus 8 Trappc11 23 108 98 CCDS HistoryNCBI Gene:320714Re-query CCDS DB by CCDS ID:22296.1Re-query CCDS DB by GeneID:320714See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039061.14 ENSMUSP00000047562.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039061.14Link to Ensembl Protein Viewer:ENSMUSP00000047562.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039061Re-query CCDS DB by Protein ID:ENSMUSP00000047562
Original member Current member NCBI NM_177240.3 NP_796214.2 Accepted alive Link to Nucleotide Sequence:NM_177240.3Link to Protein Sequence:NP_796214.2Re-query CCDS DB by Nucleotide ID:NM_177240Re-query CCDS DB by Protein ID:NP_796214Link to BLAST:NP_796214.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796214.2 1133 B2RXC1-1 1133 100% 0 0

Chromosomal Locations for CCDS 22296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 47490874 47490918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47493239 47493406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47495003 47495136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47496919 47497010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47498654 47498765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47501553 47501709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47501808 47501873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47503312 47503431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47503882 47504003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47505334 47505482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47505586 47505773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47507581 47507736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47510871 47511001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47512336 47512468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47512561 47512622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47513283 47513428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47513754 47513808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47513881 47513959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47514051 47514130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47514784 47514877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47516459 47516606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47519572 47519705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47522351 47522447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47524525 47524598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47524971 47525070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47526940 47527054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47527960 47528030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47529329 47529498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47530652 47530855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3402 nt):
ATGAGCCCCACACAGTGGGACTTCCCTGTGGAGTTATGTTGCCGGCCGATGGCTTTTGTTACACTCACTG
GCCTTGATGTTGTCTATAATGCTGTCCATCGAGCAGTCTGGGATGCTTTCTGTGCCAATCGGAGAGCTGA
CCGGGTACCAATTTCTTTCAAGGTGCTCCCAGGTGACCATGAATATCCAAAATGTAGATCAAAGAGAACG
TCGTACGAGTGGTACATCCCTAAAGGGGTCTTAAAGACGGGCTGGATGAATAAGCACCTGAACCTGGTGC
CGGCGCTGGTGGTCGTGTTCTATGAGCTGGACTGGGACGAGCCTCAGTGGAAGGAGAAGCAGTCTGAGTG
CGCTACCAGAGTGGAGATTGTCAGGCAAAGTTTGCAAGGGAGAAACACAAAAGTTGCAGTCGTCCTGATT
CAAAAGAAAACGCCTTTACCGCCAGGGGAAGATGTCATTGCTTCGGAGCGGGCTGCGGCCTTATGCAATG
TGTGTGAGCTCTCAGGCAAGTCTCTGTTTGTGCTGCCCCACACTGACCACCTTGTGGGCTACATTATAAG
ATTAGAAAATGCATTTTATGAGCATGCCCAGACCTATTACTACACGGAGATCAGAAGAGTGAAATCTCAT
AAGGAATTTTTGAATAAAACAACACACCAGCTTTTGTTTGTTAGACATCAGTTTAAAATAGCTTTCTTCA
GTGAGTTGAAACAAGATACACAAAACGCCCTGAAGAATTATAGGATTGCCTATAACCTTGTACATGAATT
GAGGGCCCATGAAACTAATATTCTGGAAATTAAGACGATGGCAGGATTTATAAACTACAAGATCTGTAGG
CTGTGTTTTCAGCACAATACCCCACTGGATGCGATTGCTCAGTTTCGAAAACACATTGACTTGTGTAAGA
AAAAGATTGGGAGTGCGGAGCTGGCCTTTGAGCACGCCGCGTGGATGGCAAAACAATTCCAGGCCTTTGG
AGACTTATTTGATGAAGCCATTAAGTTGGGGTTGACAGCTATTCAAACGCAGAACCCTGGTTTCTACTAT
CAGCAGGCAGCTTACTATGCCCAGGAGCGAAAACAGCACGCGAAAGCCCTGTGTAACCACGATGCTGCTG
TGATGTACCCCAACCCTGATCCCTTAGAAACACAATCAGGCGTTCTTGACTTTTATGGACAGAGGCCCTG
GAGACAAGGAATACTAAGCTTTGACCTCTCGGACCCTGAGAAAGAGAAAGCAGGGATTCTTGCCATTCAG
CTGAAGGAGAGAAGTGTCGTCCACTCTGAAATAATAATCGCTCTTCTGAGCAATGCTGTTGCCCAGTTCA
AGAAGTACAAGTGCCCACGGATGAAAAGCCACCTCATGGTTCAGATGGGAGAGGAGTACTACTATGCAAA
GGACTACACCAAAGCTTTGAAGCTGCTGGACTATGTGATGTGTGACTACCGGAGCGAAGCGTGGTGGACT
CTGCTCACGTCGATACTGACGACAGCCCTGAAGTGTTCCTACCTCATGGCCCAGTTAAAAGATTATATTA
CTTATTCTCTGGAACTCCTTGGACGAGCTTCAACTCTGAAAGATGAGCAGAAGTCTCGGATAGAGAAGAA
CCTCATGAATGTTTTAATGAATGAAAGCCCTGACCCTGAACCTGACTGTGATGTCTTAGCGGTGAAGACT
GCGCAGAAGCTGTGGGCGGACCGGGTCTCTCTGGCTGGCAGCAATGTCTTCCAGATAGGCGTACAGGACT
TCGTGCCATTTGTACAATGCAAAGCCAAGTTCCACGCTCCAAGTTTTCACGTGGATGTTCCTGTTGAGTT
TGATGTTTTTCTGAAGGCTGACTGTCCACACCCCATTAGGTTTTCCAAGCTCTGCGTCAGCTTTAATAAC
CAGGTTTACAACCAATTCTGTGTATTGGAAGAAGCATCCAAAGCAAGTGAGGTCTTAGAAAATCTGACTC
AGGGAAAGATGTGCTTAGTTCCCGGCAAAACAAGGAAATTGTCATTTAAATTTGTTGCAAAAACAGAAGA
TGTGGGAAAGAAAATCGAGATCACCTCTGTGGATCTGTTTCTGGGCAGCGAGTCAGGCCGGTGTGTGGTT
TTGAGCTGGCAGGGAGGAGGAGGAGATGCTGCGTCCTCCCAGGAAGCCCTGCAGGCTGCAAGGTCTTTCA
AAAGGCGGCCAAAGCTTGCTGAGGACGAGATCCACTGGGACAGCGTCATAATCCAGGCAAGCACAATGAT
CATTTCCAGAGTCCCAAACATCTCTGTCCACCTGCGACACGAGCCCCCTGCTCTAATGAATGAGATGTAC
TGTTTGGTTGTCACTGTTCAGTCCCACGAGAAGTCCCCAATCAGGGATGTGAAGCTCACTGCGGGCCTGA
AGCCAGGGCAGGATGCCAATCTAACCCAGAAAACTCATGTGACACTTCACGGGGCAGAGCTGTGTGATGA
GTCCTACCCAGCCCTCCTCACTGACATTCCTGTGGGAGACCTACACCCAGGGGAGCAGCTAGAAAAAACA
GTATATGTTCGCTGTGGAACAGTGGGTTCCAGAATGTTCCTTGTGTACGTTTCTTACCTGATCAATACAA
CTGTTGAAGGAAAAGAAATTATTTGCAAGTGTCACAAGGATGATACTGTCACAATAGAAACTGTCTTTCC
ATTTGATGTCGCAGTCAGATTTGTTTCCACAAAGTTTGAGCACCTGGAAAGAGTCTATGCAGACATCCCC
TTCCTGTTGATGACAGATGTTTTAAGTGCCTCTCCTTGGGCCCTCACAATTGTGTCCAGTGAGCTACAGC
TTGCTCCATCAATGACTGCAATGGATCATCTGGAGTCCCAGATAGACAAAGTTGTCTTACAGACAGGAGA
GAGCGCTAGCGAGTGCTTCTGTCTTCGCTGCCCGTCTGCTGGGAACATTGAAGGTGGAGTGGCAACGGGA
CATTACATTATCTCCTGGAAGAGGGCCTCGGTTGTGGAAAGCATCCCCGCCGTCAGCACCGTCATCACAC
TGCCTCACGTGATTGCTGAAAACATCCCTCTCCACGTGAACGCAGACCTGCCCTCGTTTGGACGTGTCAG
AGAGTCGTTGCCCGTCAGGTACCACCTGCAGAATAAGACCGACTTGGTTCAAGATGTGGAGATTTCTGTG
GAGCCCAGTGACGCCTTCATGTTCTCAGGCCTCAAACAGATCCGATTGCGTATTCTCCCTGGCACCAAAC
AGGAAATGCTGTATAATTTCTATCCTCTGATGGCTGGGTACCAGCAGCTGCCGTCGCTCAACATCAACTT
GCTTAGGTTTCCCAACTTCACCAACCAGCTGCTCAGACGTTTCATCCCGACCAGCATTTTTGTGAAGCCG
CAGGGTCGCCTCTTGGAGGATACCTCCATCGCTGCTGCGTGA

Translation (1133 aa):
MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRSKRT
SYEWYIPKGVLKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLI
QKKTPLPPGEDVIASERAAALCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSH
KEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRIAYNLVHELRAHETNILEIKTMAGFINYKICR
LCFQHNTPLDAIAQFRKHIDLCKKKIGSAELAFEHAAWMAKQFQAFGDLFDEAIKLGLTAIQTQNPGFYY
QQAAYYAQERKQHAKALCNHDAAVMYPNPDPLETQSGVLDFYGQRPWRQGILSFDLSDPEKEKAGILAIQ
LKERSVVHSEIIIALLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEAWWT
LLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDEQKSRIEKNLMNVLMNESPDPEPDCDVLAVKT
AQKLWADRVSLAGSNVFQIGVQDFVPFVQCKAKFHAPSFHVDVPVEFDVFLKADCPHPIRFSKLCVSFNN
QVYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLSFKFVAKTEDVGKKIEITSVDLFLGSESGRCVV
LSWQGGGGDAASSQEALQAARSFKRRPKLAEDEIHWDSVIIQASTMIISRVPNISVHLRHEPPALMNEMY
CLVVTVQSHEKSPIRDVKLTAGLKPGQDANLTQKTHVTLHGAELCDESYPALLTDIPVGDLHPGEQLEKT
VYVRCGTVGSRMFLVYVSYLINTTVEGKEIICKCHKDDTVTIETVFPFDVAVRFVSTKFEHLERVYADIP
FLLMTDVLSASPWALTIVSSELQLAPSMTAMDHLESQIDKVVLQTGESASECFCLRCPSAGNIEGGVATG
HYIISWKRASVVESIPAVSTVITLPHVIAENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISV
EPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKP
QGRLLEDTSIAAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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