NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22099.1 Public Mus musculus 8 Arhgef7 23 108 98 CCDS HistoryNCBI Gene:54126Re-query CCDS DB by CCDS ID:22099.1Re-query CCDS DB by GeneID:54126See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074856.12 ENSMUSP00000074399.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074856.12Link to Ensembl Protein Viewer:ENSMUSP00000074399.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074856Re-query CCDS DB by Protein ID:ENSMUSP00000074399
Original member NCBI NM_017402.4 NP_059098.2 Updated not alive Link to Nucleotide Sequence:NM_017402.4Link to Protein Sequence:NP_059098.2Re-query CCDS DB by Nucleotide ID:NM_017402Re-query CCDS DB by Protein ID:NP_059098
Current member NCBI NM_017402.5 NP_059098.2 Accepted alive Link to Nucleotide Sequence:NM_017402.5Link to Protein Sequence:NP_059098.2Re-query CCDS DB by Nucleotide ID:NM_017402Re-query CCDS DB by Protein ID:NP_059098Link to BLAST:NP_059098.2

Chromosomal Locations for CCDS 22099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11785716 11785914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11791456 11791544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11800460 11800554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11800773 11800868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11805201 11805323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11808716 11808854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11809517 11809576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11810251 11810397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11812597 11812683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11814943 11815021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11815161 11815300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11817660 11817884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11819638 11819731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11821960 11822049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11831493 11831592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11831895 11831949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11832970 11833092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGATG
AACTCTCCTTCTCAAAGGGTGATGTCATCCATGTCACACGAGTGGAGGAAGGAGGCTGGTGGGAGGGCAC
ACACAATGGCAGGACCGGCTGGTTCCCCAGCAACTACGTTCGAGAGATCAAGCCAAGTGAGAAGCCCGTG
TCACCCAAATCAGGGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGACTGCCATCAACAAGAGCTATT
ACAACGTGGTGCTACAGAACATCCTGGAAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTGTGCTGTC
CACCTACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAAACACTTCATATTTAATGGGAAAT
CTAGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAG
CCCAACAGAGAGTTGGTGGCTGCTTCCTGAGCCTGATGCCGCAGATGAGGACCCTGTACCTCGCTTACTG
TGCCAACCACCCATCTGCTGTGAGCGTCCTCACAGAGCACAGTGAGGACCTAGGAGAGTTCATGGAAACA
AAAGGTGCCAGCAGCCCTGGGATCCTGGTGCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCTGGACA
AGTACCCCACACTGCTAAAGGAGCTGGAGAGACACATGGAGGATTATCATCCTGATAGACAAGATATTCA
GAAGTCTATGACGGCCTTCAAAAACCTTTCAGCTCAGTGTCAAGAAGTTCGCAAGAGGAAGGAGCTGGAG
CTGCAGATCCTGACGGAGCCCATCAGGAGCTGGGAGGGGGATGACATAAAGACCCTGGGCAGTGTCACAT
ACATGTCCCAAGTCACCATTCAGTGTGCGGGAAGCGAGGAGAAGAATGAGAGATACCTCCTGCTCTTCCC
AAACCTTCTGCTCATGTTGTCTGCAAGTCCCAGGATGAGTGGTTTCATCTATCAGGGGAAGCTGCCAACA
ACAGGAATGACAATCACAAAGCTTGAGGACAGTGAAAACCATAGGAATGCATTTGAGATATCAGGGAGCA
TGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAA
GCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACACTTCCT
TCCCATCCTCTCACTCCATCCAGCAAACACGCGGACAGCAAGCCCGTGGCACTGACGCCTGCGTACCACA
CACTCCCCCACCCCTCTCACCATGGCACCCCACACACCACCATCAGCTGGGGACCCCTGGAGCCTCCGAA
GACCCCCAAGCCTTGGAGCCTGAGTTGCCTGCGGCCTGCACCTCCCCTCCGGCCCTCAGCTGCTCTCTGC
TACAAGGAGGATCTCAGTAAGAGCCCCAAGACCATGAAAAAGCTGCTGCCGAAGCGCAAGCCCGAGCGGA
AGCCTTCGGACGAGGAGTTCGCTGTGCGCAAGAGCACAGCGGCGCTGGAAGAAGACGCTCAGATCCTGAA
GGTTATCGAAGCTTATTGCACAAGTGCAAAGACGCGCCAGACCCTGAACTCAAGTTCACGCAAAGAATCT
GCTCCACAAGTGTTGCTTCCAGAAGAAGAAAAAATTATAGTCGAAGAAACCAAGAGCAATGGGCAGACAG
TGATAGAGGAAAAGAGCCTCGTGGATACGGTGTATGCGTTAAAGGATGAAGTCCAGGAGTTAAGACAGGA
TAACAAGAAGATGAAGAAGTCCTTAGAGGAGGAACAGAGGGCCCGCAAGGACTTAGAGAAGCTGGTGAGG
AAGGTTCTAAAGAATATGAACGACCCTGCCTGGGATGAGACCAATCTATAG

Translation (646 aa):
MTDNTNSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKPSEKPV
SPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETEHEYSKELQSVLSTYLRPLQTSDKLSSANTSYLMGN
LEEISSFQQVLVQSLEECTKSPEAQQRVGGCFLSLMPQMRTLYLAYCANHPSAVSVLTEHSEDLGEFMET
KGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAFKNLSAQCQEVRKRKELE
LQILTEPIRSWEGDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLMLSASPRMSGFIYQGKLPT
TGMTITKLEDSENHRNAFEISGSMIERILVSCTSQQDLHEWVEHLQKQTKVTSVSNPTIKPHSVPSHTLP
SHPLTPSSKHADSKPVALTPAYHTLPHPSHHGTPHTTISWGPLEPPKTPKPWSLSCLRPAPPLRPSAALC
YKEDLSKSPKTMKKLLPKRKPERKPSDEEFAVRKSTAALEEDAQILKVIEAYCTSAKTRQTLNSSSRKES
APQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR
KVLKNMNDPAWDETNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH