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Report for CCDS2185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2185.1 Public Homo sapiens 2 GTDC1 24 110 108 CCDS HistoryNCBI Gene:79712Re-query CCDS DB by CCDS ID:2185.1Re-query CCDS DB by GeneID:79712See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2185.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392867.7 ENSP00000376606.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392867.7Link to Ensembl Protein Viewer:ENSP00000376606.3Re-query CCDS DB by Nucleotide ID:ENST00000392867Re-query CCDS DB by Protein ID:ENSP00000376606
Original member Current member NCBI NM_001376320.2 NP_001363249.1 Accepted alive Link to Nucleotide Sequence:NM_001376320.2Link to Protein Sequence:NP_001363249.1Re-query CCDS DB by Nucleotide ID:NM_001376320Re-query CCDS DB by Protein ID:NP_001363249Link to BLAST:NP_001363249.1
Original member Current member NCBI NM_001376321.2 NP_001363250.1 Accepted alive Link to Nucleotide Sequence:NM_001376321.2Link to Protein Sequence:NP_001363250.1Re-query CCDS DB by Nucleotide ID:NM_001376321Re-query CCDS DB by Protein ID:NP_001363250Link to BLAST:NP_001363250.1
Original member Current member NCBI NM_001376322.2 NP_001363251.1 Accepted alive Link to Nucleotide Sequence:NM_001376322.2Link to Protein Sequence:NP_001363251.1Re-query CCDS DB by Nucleotide ID:NM_001376322Re-query CCDS DB by Protein ID:NP_001363251Link to BLAST:NP_001363251.1
Original member Current member NCBI NM_001376323.2 NP_001363252.1 Accepted alive Link to Nucleotide Sequence:NM_001376323.2Link to Protein Sequence:NP_001363252.1Re-query CCDS DB by Nucleotide ID:NM_001376323Re-query CCDS DB by Protein ID:NP_001363252Link to BLAST:NP_001363252.1
Original member Current member NCBI NM_001376324.2 NP_001363253.1 Accepted alive Link to Nucleotide Sequence:NM_001376324.2Link to Protein Sequence:NP_001363253.1Re-query CCDS DB by Nucleotide ID:NM_001376324Re-query CCDS DB by Protein ID:NP_001363253Link to BLAST:NP_001363253.1
Original member Current member NCBI NM_024659.6 NP_078935.2 Accepted alive Link to Nucleotide Sequence:NM_024659.6Link to Protein Sequence:NP_078935.2Re-query CCDS DB by Nucleotide ID:NM_024659Re-query CCDS DB by Protein ID:NP_078935Link to BLAST:NP_078935.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363249.1 373 Q4AE62-2 373 100% 0 0
NP_001363250.1 373 Q4AE62-2 373 100% 0 0
NP_001363251.1 373 Q4AE62-2 373 100% 0 0
NP_001363252.1 373 Q4AE62-2 373 100% 0 0
NP_001363253.1 373 Q4AE62-2 373 100% 0 0
NP_078935.2 373 Q4AE62-2 373 100% 0 0

Chromosomal Locations for CCDS 2185.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143947052 143947135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143951982 143952073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143952773 143952843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144007182 144007535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144141882 144142055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144145572 144145739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144208603 144208781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGAGTATCCTCATCATTGAAGCATTCTATGGAGGCTCCCATAAACAGCTGGTGGATCTTCTTCAAGAAG
AGTTAGGAGACTGTGTCGTTTATACCCTTCCTGCAAAGAAATGGCATTGGAGAGCCCGGACATCTGCTTT
ATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAGGACCCTCTTTGCAAGTTCAGTGCTTAACCTG
ACCGAACTGGCTGCCCTTCGGCCTGACCTTGGGAAACTGAAAAAGATTCTGTATTTTCACGAGAACCAGT
TGATATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTTTCATGCCT
GGTGGCTGATGTGGTTGTATTCAACTCAGTTTTTAATATGGAATCATTTCTCACTTCCATGGGAAAATTT
ATGAAGCTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTT
ACTTTCCCATCAGGTTTCCTGATGTGAGCAGATTCATGCCCAAGCACAAAACAACCCATTTAAAGAAGAT
GCTCGGCCTTAAAGGAAATGGCGGTGCGGTTCTGTCCATGGCCCTTCCTTTTCAGCCAGAGCAGAGAGAT
TCAGAGGATTTATTGAAGAATTTTAATTCAGAGTGTGATACACACTGTGGCCTTGATACTGCACGACAAG
AATATTTGGGTAACTCATTAAGACAGGAATCAGACTTGAAAAAATCCACCTCGTCAGATAATTCAAGCTC
TCATCATGGTGAAAATAAACAAAATCTGACTGTTGATCCCTGTGACATTTTGGGTGGAGTTGATAATCAG
CAAAGACTGCTACACATTGTCTGGCCTCACAGGTGGTTGGAAGCTGTGTACTGTGGGTGTTACCCACTTT
GTCCTAAAGATTTGGTTTATCCCGAAATATTTCCAGCTGAATATCTGTATTCTACACCTGAACAGCTTTC
AAAAAGGCTCCAGAATTTCTGCAAGAGACCAGATATTATAAGAAAACATCTCTATAAGGGTGAAATCGCT
CCGTTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTTACAACAGAACCTAGGGAAGATTTGT
GA

Translation (373 aa):
MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYRTLFASSVLNL
TELAALRPDLGKLKKILYFHENQLIYPVKKCQERDFQYGYNQILSCLVADVVVFNSVFNMESFLTSMGKF
MKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKTTHLKKMLGLKGNGGAVLSMALPFQPEQRD
SEDLLKNFNSECDTHCGLDTARQEYLGNSLRQESDLKKSTSSDNSSSHHGENKQNLTVDPCDILGGVDNQ
QRLLHIVWPHRWLEAVYCGCYPLCPKDLVYPEIFPAEYLYSTPEQLSKRLQNFCKRPDIIRKHLYKGEIA
PFSWAALHGKFRSLLTTEPREDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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