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Report for CCDS21655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21655.1 Public Mus musculus 7 Trim3 23 108 98 CCDS HistoryNCBI Gene:55992Re-query CCDS DB by CCDS ID:21655.1Re-query CCDS DB by GeneID:55992See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057525.13 ENSMUSP00000053384.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057525.13Link to Ensembl Protein Viewer:ENSMUSP00000053384.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057525Re-query CCDS DB by Protein ID:ENSMUSP00000053384
Original member Current member EBI ENSMUST00000106789.7 ENSMUSP00000102401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106789.7Link to Ensembl Protein Viewer:ENSMUSP00000102401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106789Re-query CCDS DB by Protein ID:ENSMUSP00000102401
Original member Current member EBI ENSMUST00000147044.3 ENSMUSP00000114822.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147044.3Link to Ensembl Protein Viewer:ENSMUSP00000114822.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000147044Re-query CCDS DB by Protein ID:ENSMUSP00000114822
Original member Current member NCBI NM_001285870.1 NP_001272799.1 Accepted alive Link to Nucleotide Sequence:NM_001285870.1Link to Protein Sequence:NP_001272799.1Re-query CCDS DB by Nucleotide ID:NM_001285870Re-query CCDS DB by Protein ID:NP_001272799Link to BLAST:NP_001272799.1
Original member Current member NCBI NM_001285871.1 NP_001272800.1 Accepted alive Link to Nucleotide Sequence:NM_001285871.1Link to Protein Sequence:NP_001272800.1Re-query CCDS DB by Nucleotide ID:NM_001285871Re-query CCDS DB by Protein ID:NP_001272800Link to BLAST:NP_001272800.1
Original member Current member NCBI NM_018880.3 NP_061368.1 Accepted alive Link to Nucleotide Sequence:NM_018880.3Link to Protein Sequence:NP_061368.1Re-query CCDS DB by Nucleotide ID:NM_018880Re-query CCDS DB by Protein ID:NP_061368Link to BLAST:NP_061368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272799.1 744 Q9R1R2 744 100% 0 0
NP_001272800.1 744 Q9R1R2 744 100% 0 0
NP_061368.1 744 Q9R1R2 744 100% 0 0

Chromosomal Locations for CCDS 21655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105611058 105611210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105611329 105611469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105612607 105612677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105612898 105613066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105613249 105613416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105617441 105617544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105617742 105618474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105618666 105618846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105619059 105619210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105619383 105619614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105625406 105625536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGCAAAGAGGGAGGACAGCCCTGGCCCGGAGGTGCAGCCAATGGACAAGCAGTTTCTGGTATGCAGTA
TCTGTCTGGATCGGTACCGGTGCCCCAAAGTTCTGCCTTGTCTACATACCTTCTGTGAAAGATGCCTCCA
GAACTACATCCCTCCTCAGAGCCTGACACTGTCCTGTCCAGTGTGCCGGCAGACATCCATCCTCCCAGAA
CAGGGCGTCTCAGCCCTACAAAACAACTTCTTCATCAGCAGCCTCATGGAGGCCATGCAGCAGGCACCTG
AGGGGGCTCATGACCCTGAAGACCCCCACCCCCTCAGCGCAGTGGCTGGCCGCCCTCTCTCCTGCCCCAA
CCATGAAGGCAAGACAATGGAGTTTTACTGTGAGGCCTGTGAGACTGCCATGTGTGGTGAGTGCCGCGCA
GGGGAGCACCGTGAACACGGCACAGTGCTGTTGCGGGATGTGGTGGAGCAGCACAAGGCAGCTCTGCAGC
GCCAGCTTGAGGCTGTGCGTGGCCGATTGCCACAGCTGTCTGCAGCTATCGCCTTGGTTGGGGGTATCAG
CCAGCAGCTGCAAGAGCGCAAGGCAGAGGCCCTGGCTCAGATAAGTGCTGCCTTTGAGGACCTGGAGCAA
GCTCTGCAGCAGCGCAAGCAGGCTCTGGTCAGCGACTTGGAGAGCATTTGTGGGGCCAAACAGAAGGTGT
TGCAGACACAGTTAGACACACTGCGCCAGGGCCAGGAGCACATTGGCAGTAGCTGCAGCTTTGCAGAGCA
GGCACTGAGACTGGGCTCTGCCCCTGAGGTTTTGCTAGTAAGAAAGCATATGCGAGAGAGGCTGGCTGCT
CTGGCAGCTCAGGCCTTCCCAGAAAGGCCACATGAGAATGCCCAGCTGGAACTGGTCCTTGAAGTGGACG
GGTTGCGGAGATCGGTGCTCAACCTGGGGGCACTGCTCACCACCAGTGCTACAGCCCATGAGACAGTGGC
CACGGGCGAGGGCCTGCGCCAGGCACTAGTTGGCCAGCCTGCTTCTCTCACTGTCACCACCAAAGACAAA
GATGGGCGGCTGGTGCGCACAGGCAGCGCAGAGCTGTGTGCAGAGATCACTGGCCCCGATGGTGTGCGCC
TTGCAGTACCGGTGGTGGACCACAAAAATGGCACATACGAGCTGGTGTACACTGCACGCACAGAAGGTGA
CCTGCTCCTCTCAGTGCTGCTCTATGGACAGCCGGTGCGTGGCAGCCCTTTTCGTGTGCGTGCCCTTCGA
CCTGGGGACCTGCCACCTTCCCCAGATGATGTGAAGCGCCGGGTCAAGTCTCCCGGTGGTCCTGGCAGTC
ATGTGCGCCAGAAGGCAGTTCGTAGGCCGAGCTCCATGTACAGCACTGGTGGCAAACGGAAGGACAATCC
AATTGAAGACGAACTCGTCTTTCGTGTTGGTAGTCGTGGAAGGGAGAAGGGTGAATTCACCAATTTACAA
GGTGTGTCCGCTGCTAGCAGTGGCCGCATCGTGGTAGCAGACAGCAACAACCAATGTATTCAGGTTTTCT
CCAATGAGGGCCAGTTCAAGTTCCGATTTGGGGTCCGTGGGCGCTCACCTGGGCAACTACAGCGTCCTAC
AGGTGTGGCAGTGGACACCAATGGAGACATTATTGTGGCAGACTATGACAACCGTTGGGTCAGCATCTTC
TCTCCTGAAGGCAAGTTCAAGACCAAGATTGGAGCTGGCCGCCTCATGGGACCCAAGGGAGTGGCTGTGG
ACCGAAATGGACATATCATTGTGGTGGATAACAAATCTTGCTGTGTCTTCACCTTCCAGCCCAATGGCAA
GCTTGTTGGGCGTTTTGGAGGCCGTGGGGCCACTGACCGCCACTTTGCAGGGCCCCACTTTGTGGCTGTG
AACAACAAGAATGAGATTGTAGTAACGGATTTCCATAACCATTCAGTGAAGGTGTACAGTGCTGACGGAG
AGTTCCTCTTCAAATTTGGCTCGCATGGCGAGGGCAACGGACAGTTCAATGCCCCCACGGGAGTAGCTGT
GGATTCCAATGGGAACATCATCGTGGCCGACTGGGGCAACAGCCGCATACAGGTATTCGACAGCTCTGGT
TCCTTCCTGTCCTATATCAACACGTCTGCAGAGCCACTATATGGCCCACAGGGCTTGGCATTGACCTCGG
ATGGCCACGTGGTAGTGGCTGATGCTGGCAACCACTGCTTTAAGGCCTATCGATACCTCCAGTAG

Translation (744 aa):
MAKREDSPGPEVQPMDKQFLVCSICLDRYRCPKVLPCLHTFCERCLQNYIPPQSLTLSCPVCRQTSILPE
QGVSALQNNFFISSLMEAMQQAPEGAHDPEDPHPLSAVAGRPLSCPNHEGKTMEFYCEACETAMCGECRA
GEHREHGTVLLRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQ
ALQQRKQALVSDLESICGAKQKVLQTQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAA
LAAQAFPERPHENAQLELVLEVDGLRRSVLNLGALLTTSATAHETVATGEGLRQALVGQPASLTVTTKDK
DGRLVRTGSAELCAEITGPDGVRLAVPVVDHKNGTYELVYTARTEGDLLLSVLLYGQPVRGSPFRVRALR
PGDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMYSTGGKRKDNPIEDELVFRVGSRGREKGEFTNLQ
GVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIF
SPEGKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAV
NNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDSSG
SFLSYINTSAEPLYGPQGLALTSDGHVVVADAGNHCFKAYRYLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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