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Report for CCDS21628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21628.1 Public Mus musculus 7 Usp17lb 23 108 98 CCDS HistoryNCBI Gene:381944Re-query CCDS DB by CCDS ID:21628.1Re-query CCDS DB by GeneID:381944See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076501.1 ENSMUSP00000075822.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076501.1Link to Ensembl Protein Viewer:ENSMUSP00000075822.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000076501Re-query CCDS DB by Protein ID:ENSMUSP00000075822
Original member Current member NCBI NM_201409.3 NP_958811.2 Accepted alive Link to Nucleotide Sequence:NM_201409.3Link to Protein Sequence:NP_958811.2Re-query CCDS DB by Nucleotide ID:NM_201409Re-query CCDS DB by Protein ID:NP_958811Link to BLAST:NP_958811.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958811.2 468 E9Q9U0-1 468 100% 0 0

Chromosomal Locations for CCDS 21628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104840312 104841690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104842477 104842504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGTGGTTGCTCTCTCCTTCCCAGAAGCAGATCCAGCCATGTCACCTCCTAGTGCCCCAGAGCTGCATC
AGGATGAAGCCCAGGTGGTAGAGGAGCTGGCTGCCAATGGAAAGCACAGTCTGAGTTGGGAGAGTCCCCA
AGGACCAGGATGCGGGCTCCAGAACACAGGCAACAGCTGCTACCTGAATGCAGCCCTGCAGTGCTTGACA
CACACACCACCTCTAGCTGACTACATGCTGTCCCAGGAGCACAGTCAAACCTGTTGTTCCCCAGAAGGCT
GTAAGATGTGTGCTATGGAAGCCCATGTGACCCAGAGTCTCCTGCACACCCACTCAGGGGATGTTATGAA
GCCCTCCCAGAATTTGACCTCTGCCTTCCACAAGCGCAAGCAGGAAGATGCCCATGAGTTTCTCATGTTC
ACCTTGGAAACAATGCATGAATCCTGCCTTCAAGTGCACAGACAATCAGAACCCACCTCTGAGGACAGCT
CACCCATTCATGACATATTTGGAGGCTGGTGGAGGTCTCAGATCAAGTGTCACCACTGCCAGGGCACCTC
ATATTCCTATGATCCCTTCCTGGACATCCCCCTGGATATCAGCTCAGTTCAGAGTGTGAAGCAAGCCTTG
CAGGATACAGAGAAGGCAGAAGAGCTATGTGGGGAGAATTCCTACTACTGTGGTAGGTGTAGACAAAAGA
AGCCAGCTTCCAAGACCCTAAAGCTTTATAGTGCCCCAAAGGTACTCATGCTAGTGTTAAAGCGCTTTTC
GGGCTCTATGGGTAAAAAGTTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTG
TCCCAGCCTACTGGAGGGCCTTTGCCTTATGCCCTCTATGCCGTCCTGGTCCATGAAGGTGCAACTTGTC
ACAGTGGACATTACTTCTGTTGTGTCAAAGCTGGCCATGGGAAGTGGTACAAGATGGATGATACTAAGGT
CACCAGCTGTGATGTGACTTCTGTCCTGAATGAGAATGCCTATGTGCTCTTCTATGTGCAGCAGAATGAC
CTCAAAAAGGGTAGTATCAACATGCCAGAGGGCAGAATACATGAGGTTCTTGATGCCAAATACCAGCTGA
AGAAATCAGGGGAAAAAAAGCATAATAAAAGCCCTTGCACAGAAGATGCAGGAGAGCCCTGCGAAAACAG
GGAGAAGAGATCATCCAAAGAAACCTCCTTAGGGGAGGGGAAAGTTCTTCAGGAACAGGACCACCAGAAA
GCTGGGCAGAAACAAGAGAATACCAAACTCACGCCTCAGGAACAGAACCACGAGAAAGGTGGGCAGAACC
TCAGGAATACTGAAGGTGAACTTGATCGACTCAGTGGTGCAATTGTGGTTTACCAACCTATATGCACTGC
AAACTGA

Translation (468 aa):
MVVALSFPEADPAMSPPSAPELHQDEAQVVEELAANGKHSLSWESPQGPGCGLQNTGNSCYLNAALQCLT
HTPPLADYMLSQEHSQTCCSPEGCKMCAMEAHVTQSLLHTHSGDVMKPSQNLTSAFHKRKQEDAHEFLMF
TLETMHESCLQVHRQSEPTSEDSSPIHDIFGGWWRSQIKCHHCQGTSYSYDPFLDIPLDISSVQSVKQAL
QDTEKAEELCGENSYYCGRCRQKKPASKTLKLYSAPKVLMLVLKRFSGSMGKKLDRKVSYPEFLDLKPYL
SQPTGGPLPYALYAVLVHEGATCHSGHYFCCVKAGHGKWYKMDDTKVTSCDVTSVLNENAYVLFYVQQND
LKKGSINMPEGRIHEVLDAKYQLKKSGEKKHNKSPCTEDAGEPCENREKRSSKETSLGEGKVLQEQDHQK
AGQKQENTKLTPQEQNHEKGGQNLRNTEGELDRLSGAIVVYQPICTAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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