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Report for CCDS21506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21506.1 Public Mus musculus 7 Relt 23 108 98 CCDS HistoryNCBI Gene:320100Re-query CCDS DB by CCDS ID:21506.1Re-query CCDS DB by GeneID:320100See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008462.10 ENSMUSP00000008462.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008462.10Link to Ensembl Protein Viewer:ENSMUSP00000008462.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000008462Re-query CCDS DB by Protein ID:ENSMUSP00000008462
Original member Current member NCBI NM_177073.6 NP_796047.2 Accepted alive Link to Nucleotide Sequence:NM_177073.6Link to Protein Sequence:NP_796047.2Re-query CCDS DB by Nucleotide ID:NM_177073Re-query CCDS DB by Protein ID:NP_796047Link to BLAST:NP_796047.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796047.2 436 Q8BX43 436 100% 0 0

Chromosomal Locations for CCDS 21506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100847230 100847277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100847396 100847594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100848019 100848273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100848422 100848503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100848799 100848879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100850065 100850322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100851093 100851172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100851354 100851520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100851640 100851714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100853046 100853111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGTCACTCCAGGGCCTGATGATGAAGCGGACCTTGCTGTGCTGGCCCCTGTCTTGCCTCTTTGTGCTGC
TGCCCTGGCCTCTGGCCACTCCAACACCAATAACTCCTTGGCTGTGTCCACCTGGCAAAGAGCCTGACCC
AGATCCAGGACAGGGCACATTATGCAGAACTTGCCCCCCAGGAACCTTTTCAGCCTCATGGAACTCCTAT
CCATGCCAGCCTCATTACCGATGCAGCCTTCAAAAGAGGCTGGAGGCCCAGGCTGGCACAGCAACTCATG
ATACAATGTGTGGAGACTGCCAGCATGGGTGGTTTGGGCCACAGGGAGTTCCTCATGTTCCGTGTCAGCC
ATGTTCCAAGGCACCTCCAAGTACTGGTGGCTGTGATGAGTCAGGGCGGCGGGGCCGGCGTGGCGTCGAA
GTGGCAGCAGGTACCAGTAGCAACGGTGAACCTCGGCAGCCCGGGAATGGCACTCGGGCAGGCGGTCCTG
AGGAGACGGCTGCCCAGTATGCAGTGATTGCCATCGTTCCTGTCTTTTGTCTCATGGGGCTTCTGGGCAT
CCTGGTGTGCAACCTGCTCAAGCGGAAGGGCTACCATTGCACAGCCCAAAAGGAAGTTGGGCCCAGCCCT
GGTGGAGGAGGCAGCGGGATTAATCCTGCCTATAGGACTGAAGATGCCAACGAGGACACCATTGGAGTCC
TGGTGCGCCTGATCACAGAGAAGAAAGAGAATGCAGCGGCCCTGGAGGAGCTGTTGAAAGAATATCACAG
CAAACAGCTGGTACAGACAAGTCACAGGCCTGTACCCAGGCTGCTGCCGGCCTCACCCAGCATACCCCAC
ATCTGCCCGCATCACCACCACCTGCACACTGTGCAGGGCCTGGCCTCACTCTCTGGCCCCTGTTGCTCCC
GTTGTAGCCAGAAGTGGCCAGAGGTGCTGCTGTCTCCTGAGGCAGCAGCTGCCACCACTCCTGCTCCCAC
CCTTCTGCCTACTGCATCCAGGGCTCCCAAGGCTAGTGCCAAGCCAGGACGTCAGGGCGAGATTACCATC
TTGTCTGTGGGCAGGTTCCGTGTGGCTCGTATTCCTGAGCAGCGGACCAGTTCATTGTTATCTGAGGTGA
AGACCATCACGGAGGCTGGGCCTTCAGAGGGTGATCTCCCTGACTCCCCACAGCCTGGTCTTCCCCCCGA
GCAGCGGGCACTGCTGGGAAGTGGTGGGAGCCATACTAAGTGGTTGAAGCCCCCAGCAGAGAACAAAGCT
GAGGAGAACCGCTATGTGGTCCGGCTAAGTGAAAGCAACCTGGTCATCTGA

Translation (436 aa):
MSLQGLMMKRTLLCWPLSCLFVLLPWPLATPTPITPWLCPPGKEPDPDPGQGTLCRTCPPGTFSASWNSY
PCQPHYRCSLQKRLEAQAGTATHDTMCGDCQHGWFGPQGVPHVPCQPCSKAPPSTGGCDESGRRGRRGVE
VAAGTSSNGEPRQPGNGTRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAQKEVGPSP
GGGGSGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLLPASPSIPH
ICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASRAPKASAKPGRQGEITI
LSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGLPPEQRALLGSGGSHTKWLKPPAENKA
EENRYVVRLSESNLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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