NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21231.1 Public Mus musculus 7 Aldh16a1 23 108 98 CCDS HistoryNCBI Gene:69748Re-query CCDS DB by CCDS ID:21231.1Re-query CCDS DB by GeneID:69748See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209963.1 ENSMUSP00000148069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209963.1Link to Ensembl Protein Viewer:ENSMUSP00000148069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209963Re-query CCDS DB by Protein ID:ENSMUSP00000148069
Original member Current member NCBI NM_145954.2 NP_666066.1 Accepted alive Link to Nucleotide Sequence:NM_145954.2Link to Protein Sequence:NP_666066.1Re-query CCDS DB by Nucleotide ID:NM_145954Re-query CCDS DB by Protein ID:NP_666066Link to BLAST:NP_666066.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666066.1 802 Q571I9 802 99.7506% 0 2

Chromosomal Locations for CCDS 21231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45141941 45142102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45142780 45142902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45143113 45143298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45144513 45144714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45144867 45145034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45145476 45145606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45145685 45145790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45145903 45146039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45146194 45146289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45146623 45146808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45147162 45147314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45147399 45147580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45147725 45147802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45147884 45148062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45148614 45148740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45149664 45149766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45154392 45154481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGCGGCTACGCGTGTACAGCCCAGTACCCGGGAGATTTTCACGACGCTGGAGTACGGACCGGTGCCGG
AGAGCCACGCATGCGCACTGGCCTGGCTGGACACCCACAACCGCCTCTTGGGCCACCATGTCAATGGGAT
GTGGCTGAAGCCAGAACACAGGAATCCAGCGCCTTGCCAGGATCCCATCACAGGAGAAAACCTGGCCAGC
TGCTTGCAAGCAGAGGCTGAGGACATCGCTGCAGCTGTGGAGGCTGCAAAGATAGCATTCAAGGCCTGGA
GCCAACTCCCTGGAGCTGCTCGGGGACAACACCTAACCCGGCTGGCCAAGGTCGTTCAGAAGCACCAGCG
ACTGCTGTGGACCCTGGAATCCCTGGTCACTGGACGGGCTGTTCGAGAGGTTCGAGATGGAGATGTGCCA
CTGGCCCAGCAACTGCTCCAGTACCATGCAGTCCAGGCACATGCCCAGGGTGACGCACTGGCAGACTGGC
AGCCCGTGGGAGTCATTGGCCTCATCCTGCCGACTCCTTTCTCTTTCTTGGACATGATGTGGAGGGTCTG
CCCTGCCTTGGCTATGGGCTGCACCGTGGTGGCCCTCGTGCCCCCAGCCTTCCCGACACCTCTCCTCCTG
GCTCAGCTGGCAGGAGAGCTTGGCTCTTTCCCAGGGATCCTCAATGTGGTATGTGGCCCTGCCTCGCTGG
GGCCTGTCCTGGCCTCCCAACCTGGAGTCCAGAAGGTGGCTTTCTGCGGAGCCGTGGAGGAAGGACGTGT
TCTGCGACGGACTCTAGCAGGCAGGGGAGCTGAGCTGGGCCTGGCCCTGGGCACAGAGTCACTGTTGCTA
TTGATGGACTCCGCAGATGTGGACTCAGCTGTGGAGGGTGTCGTGGATGCCGTCTGGTCAGACCGCAGCC
TGGGGGGGCTCAGGCTCCTCATCCAGGAATCTGTATGGGATGAAGCTATGAGGCGACTCCAGGCCAGAAT
GGCACAGATACGGAGTGGGAGAGGACTGGATGGGGCTGTGGACATGGGGGCTCGAGGAGCTGCTGCCCGA
GACCTGGCCCAGAGCTTTGTGGATGAGGCCCAAAGCCAAGGGGGACAGGTATTCCAAGCTGGTGATGTGC
CCTCCAGTAGCCCATTCTTCTCTCCAGCCTTGGTTTCTGGTCTGCCTCCAGCAGCCCCATGTGCCCAGGC
CGAGGTACCGTGGCCTGTGGTTATGGCTTCTCCTTTCCGCACAGTCAAGGAGGCACTAGCCCTGGCCAAT
GGAACACCCCGGGGAGGCAGCGCCAGCGTGTGGAGTGAAAGGCTAGGGCAAGCCCTGGAGCTGGGCTATG
GGCTCCAGGTGGGCACAGTGTGGATCAATGCTCATGGCCTCCGAGACCCTGCGGTGCCGACAGGGGGCTG
CAAGGAGAGTGGGTCTTCCTGGCACGGAGGCCCAGATGGCCTGTATGAGTACCTGCAGCCCTTGGGGACA
CCTTCCCAGGAGTCCTTCCTTTGTGAGAATATCAACTACGACACATTTGGCCTTGCTGCGTCCTCCATTC
TGCCGTCAGGGCCAGAAACAGGGCCTAGCCCAGCCCCTCCCTATGGGCTGTTTGTCGGAGGCCGTTTCCA
GTCTCCTGGGACCCAGAGCTCCAGGCCCATCCAAGATTCTTCAGGCAAAGTCTCCAGCTATGTAGCTGAG
GGTGGAGCCAAGGATATCCGAGGTGCTGTAGAGGCTGCTCATCAGGCTGCCCCTGGCTGGGGAGCCCAGT
CCCCAAGAGCCCGAGCAGGCCTGCTGTGGGCCCTGGCGGCTGCTCTGGAGCGCAGGAAGCCAGTGCTGAC
CTCACAACTAGAAAGGCACGGAGCAGCGCCTACAGTTGCCAAGATTGAAGTAGAACTGAGTGTGAGGCGA
CTCCAGACATGGGGCACCCGGGTTCAGGACCAAGGCCAGACACTACAGGTAACAGGATTGAGAGGCCCTG
TGCTCCGGCTTCGAGAACCATTGGGAGTGCTGGCCGTGGTGTGCCCGGATGAGTGGCCCCTGCTGGCTTT
TGTGTCACTACTGGCCCCTGCACTGGCCCATGGCAATGCCGTGGTCTTAGTACCCAGTGGGGCATGTCCT
CTGCTGGCCTTGGAGGTCTGCCAGGATATAGCTCCTCTGTTTCCTGCTGGCCTGGTGAGTGTAGTGACAG
GGGATCGCGACCACCTGACCCGCTGTCTGGCCTTACATCAGGATGTCCAAGCCCTGTGGTACTTCGGCTC
GGCCCAGGGCTCCCAGTTTGTGGAATGGGCCTCTGCAGGAAACCTCAAGTCTGTGTGGGTAAACAGGGGC
TTCCCAAGGGCCTGGGATGTGGAGGTCCAGGGGGCAGGACAGGAGCTGAGTCTTCACGCAGCACGAACAA
AGGCCCTGTGGCTGCCAATGGGGGACTGA

Translation (802 aa):
MAATRVQPSTREIFTTLEYGPVPESHACALAWLDTHNRLLGHHVNGMWLKPEHRNPAPCQDPITGENLAS
CLQAEAEDIAAAVEAAKIAFKAWSQLPGAARGQHLTRLAKVVQKHQRLLWTLESLVTGRAVREVRDGDVP
LAQQLLQYHAVQAHAQGDALADWQPVGVIGLILPTPFSFLDMMWRVCPALAMGCTVVALVPPAFPTPLLL
AQLAGELGSFPGILNVVCGPASLGPVLASQPGVQKVAFCGAVEEGRVLRRTLAGRGAELGLALGTESLLL
LMDSADVDSAVEGVVDAVWSDRSLGGLRLLIQESVWDEAMRRLQARMAQIRSGRGLDGAVDMGARGAAAR
DLAQSFVDEAQSQGGQVFQAGDVPSSSPFFSPALVSGLPPAAPCAQAEVPWPVVMASPFRTVKEALALAN
GTPRGGSASVWSERLGQALELGYGLQVGTVWINAHGLRDPAVPTGGCKESGSSWHGGPDGLYEYLQPLGT
PSQESFLCENINYDTFGLAASSILPSGPETGPSPAPPYGLFVGGRFQSPGTQSSRPIQDSSGKVSSYVAE
GGAKDIRGAVEAAHQAAPGWGAQSPRARAGLLWALAAALERRKPVLTSQLERHGAAPTVAKIEVELSVRR
LQTWGTRVQDQGQTLQVTGLRGPVLRLREPLGVLAVVCPDEWPLLAFVSLLAPALAHGNAVVLVPSGACP
LLALEVCQDIAPLFPAGLVSVVTGDRDHLTRCLALHQDVQALWYFGSAQGSQFVEWASAGNLKSVWVNRG
FPRAWDVEVQGAGQELSLHAARTKALWLPMGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH