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Report for CCDS21052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21052.1 Public Mus musculus 7 Mrps12 23 108 98 CCDS HistoryNCBI Gene:24030Re-query CCDS DB by CCDS ID:21052.1Re-query CCDS DB by GeneID:24030See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056078.8 ENSMUSP00000062066.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056078.8Link to Ensembl Protein Viewer:ENSMUSP00000062066.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056078Re-query CCDS DB by Protein ID:ENSMUSP00000062066
Original member Current member EBI ENSMUST00000171183.1 ENSMUSP00000132443.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171183.1Link to Ensembl Protein Viewer:ENSMUSP00000132443.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171183Re-query CCDS DB by Protein ID:ENSMUSP00000132443
Original member Current member NCBI NM_001360250.1 NP_001347179.1 Accepted alive Link to Nucleotide Sequence:NM_001360250.1Link to Protein Sequence:NP_001347179.1Re-query CCDS DB by Nucleotide ID:NM_001360250Re-query CCDS DB by Protein ID:NP_001347179Link to BLAST:NP_001347179.1
Original member Current member NCBI NM_001360252.1 NP_001347181.1 Accepted alive Link to Nucleotide Sequence:NM_001360252.1Link to Protein Sequence:NP_001347181.1Re-query CCDS DB by Nucleotide ID:NM_001360252Re-query CCDS DB by Protein ID:NP_001347181Link to BLAST:NP_001347181.1
Original member Current member NCBI NM_011885.5 NP_036015.1 Accepted alive Link to Nucleotide Sequence:NM_011885.5Link to Protein Sequence:NP_036015.1Re-query CCDS DB by Nucleotide ID:NM_011885Re-query CCDS DB by Protein ID:NP_036015Link to BLAST:NP_036015.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347179.1 139 O35680 139 100% 0 0
NP_001347181.1 139 O35680 139 100% 0 0
NP_036015.1 139 O35680 139 100% 0 0

Chromosomal Locations for CCDS 21052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28739869 28740239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28741487 28741535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGTCCTGGCCCGGCCTTCTTTATGGCCTCACCACGTCCCTCAGTCGTGGCCTAGCCCTCGCTCCCCAGC
TCTGGGCCGCCCGTTCCATGGCCACCCTGAACCAGATGCACCGCTTAGGCCCCCGGAAGGAACCCCCTAA
GCGTCTGGGCCCCACAGAGGGCCGGCCCCAGCTGAAGGGTGTGGTGTTGCGCACATTCATCCGAAAGCCG
AAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAAAGAGGCTGTCTGCT
TCATCCCCGGGGAGGGCCACACCCTGCAGGAGCATCACGTGGTCCTCGTGGAGGGTGGTCGCACCCAGGA
CCTGCCTGGGGTCAAACTCAAAGTTGTGAGGGGCAAGTATGACTGCGGCCACGTGCAAAAGAAGAAATGA

Translation (139 aa):
MSWPGLLYGLTTSLSRGLALAPQLWAARSMATLNQMHRLGPRKEPPKRLGPTEGRPQLKGVVLRTFIRKP
KKPNSANRKCCRVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVRGKYDCGHVQKKK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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