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Report for CCDS20749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20749.1 Public Mus musculus 7 Nat14 23 108 98 CCDS HistoryNCBI Gene:269854Re-query CCDS DB by CCDS ID:20749.1Re-query CCDS DB by GeneID:269854See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047309.5 ENSMUSP00000045354.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047309.5Link to Ensembl Protein Viewer:ENSMUSP00000045354.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047309Re-query CCDS DB by Protein ID:ENSMUSP00000045354
Original member Current member EBI ENSMUST00000207687.1 ENSMUSP00000147229.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207687.1Link to Ensembl Protein Viewer:ENSMUSP00000147229.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207687Re-query CCDS DB by Protein ID:ENSMUSP00000147229
Original member Current member NCBI NM_001358881.1 NP_001345810.1 Accepted alive Link to Nucleotide Sequence:NM_001358881.1Link to Protein Sequence:NP_001345810.1Re-query CCDS DB by Nucleotide ID:NM_001358881Re-query CCDS DB by Protein ID:NP_001345810Link to BLAST:NP_001345810.1
Original member Current member NCBI NM_001358882.1 NP_001345811.1 Accepted alive Link to Nucleotide Sequence:NM_001358882.1Link to Protein Sequence:NP_001345811.1Re-query CCDS DB by Nucleotide ID:NM_001358882Re-query CCDS DB by Protein ID:NP_001345811Link to BLAST:NP_001345811.1
Original member Current member NCBI NM_001358883.1 NP_001345812.1 Accepted alive Link to Nucleotide Sequence:NM_001358883.1Link to Protein Sequence:NP_001345812.1Re-query CCDS DB by Nucleotide ID:NM_001358883Re-query CCDS DB by Protein ID:NP_001345812Link to BLAST:NP_001345812.1
Original member Current member NCBI NM_001358884.1 NP_001345813.1 Accepted alive Link to Nucleotide Sequence:NM_001358884.1Link to Protein Sequence:NP_001345813.1Re-query CCDS DB by Nucleotide ID:NM_001358884Re-query CCDS DB by Protein ID:NP_001345813Link to BLAST:NP_001345813.1
Original member Current member NCBI NM_201355.3 NP_958743.1 Accepted alive Link to Nucleotide Sequence:NM_201355.3Link to Protein Sequence:NP_958743.1Re-query CCDS DB by Nucleotide ID:NM_201355Re-query CCDS DB by Protein ID:NP_958743Link to BLAST:NP_958743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345810.1 206 Q8BVG8 206 100% 0 0
NP_001345811.1 206 Q8BVG8 206 100% 0 0
NP_001345812.1 206 Q8BVG8 206 100% 0 0
NP_001345813.1 206 Q8BVG8 206 100% 0 0
NP_958743.1 206 Q8BVG8 206 100% 0 0

Chromosomal Locations for CCDS 20749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4923258 4923329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4923903 4924451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCCCCTAACCACCTGTCAGTGCGGGAAATGAGGGAAGATGAGAAGCCCCTGGTGCTGGAGATGCTGA
AGGCTGGTGTAAAAGACACGGAAAACCGTGTGGCCCTCCACGCTCTGACACGACCTCCAGCCCTTCTCCT
CCTGGCTGCAGCCAGCAGCGGACTGCGCTTCATCCTGGCCTCCTTCGCCCTGGCCCTCCTGCTGCCCGTG
TTTCTGGCTGTAGCCGCTGTGAAGCTGGGTTTGCGAGCCCGATGGGGCTCTCTGCCTCCACCAGGCGGCC
TGGGAGGGCCCTGGGTGGCTGTCCGTGGCTCCGGCGATGTGTGTGGAGTCCTGGCTCTGGCCCCTGGTGC
CAACGTGGGGGATGGAGCCCGAGTCACCCGCCTCTCTGTCTCTCGATGGCACCGTCGCAGGGGCGTGGGC
AGAAGGCTGCTGGCCTTTGCCGAGGCTCGAGCCCGAGCATGGGCTGGAAGTATGGGGGAGCCTCGGGCCC
GGCTCGTGGTCCCAGTGGCTGTAGCCGCTTGGGGGGTGGCAGGGTTATTGGAGGCCTGTGGCTACCAGGC
AGAGGGAGGCTGGGGCTGCATGGGCTATATGCTGGTTAGGGAATTCAGCAAAGACCTGTGA

Translation (206 aa):
MAPNHLSVREMREDEKPLVLEMLKAGVKDTENRVALHALTRPPALLLLAAASSGLRFILASFALALLLPV
FLAVAAVKLGLRARWGSLPPPGGLGGPWVAVRGSGDVCGVLALAPGANVGDGARVTRLSVSRWHRRRGVG
RRLLAFAEARARAWAGSMGEPRARLVVPVAVAAWGVAGLLEACGYQAEGGWGCMGYMLVREFSKDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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