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Report for CCDS20700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20700.1 Public Mus musculus 6 Med21 23 108 98 CCDS HistoryNCBI Gene:108098Re-query CCDS DB by CCDS ID:20700.1Re-query CCDS DB by GeneID:108098See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032429.8 ENSMUSP00000032429.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032429.8Link to Ensembl Protein Viewer:ENSMUSP00000032429.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000032429Re-query CCDS DB by Protein ID:ENSMUSP00000032429
Original member Current member EBI ENSMUST00000204040.1 ENSMUSP00000145512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204040.1Link to Ensembl Protein Viewer:ENSMUSP00000145512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204040Re-query CCDS DB by Protein ID:ENSMUSP00000145512
Original member Current member NCBI NM_025315.3 NP_079591.1 Accepted alive Link to Nucleotide Sequence:NM_025315.3Link to Protein Sequence:NP_079591.1Re-query CCDS DB by Nucleotide ID:NM_025315Re-query CCDS DB by Protein ID:NP_079591Link to BLAST:NP_079591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079591.1 144 Q9CQ39 144 100% 0 0

Chromosomal Locations for CCDS 20700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 146642611 146642652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146648165 146648279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146649150 146649250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146650111 146650287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGCGGATAGACTCACTCAGCTGCAGGACGCTGTGAACTCGCTTGCAGATCAGTTTTGTAATGCCATTG
GTGTATTACAGCAGTGTGGTCCTCCTGCCTCTTTTAGTAACATTCAAACAGCAATTAATAAAGATCAACC
AGCCAATCCTACAGAAGAGTATGCTCAGCTTTTTGCAGCACTGATTGCACGAACAGCAAAAGATATTGAT
GTTTTGATAGATTCCTTACCCAGTGAAGAGTCTACAGCTGCTTTACAGGCTGCTAGCTTATATAAGCTAG
AAGAAGAAAATCACGAAGCTGCTACATGTCTGGAGGATGTTGTTTATCGAGGAGACATGCTTCTGGAGAA
GATCCAAAGTGCACTTGCTGACATTGCACAGTCACAGCTGAAGACCAGAAGTGTTACCCATAGTCACTCT
CTCCCAGACTCATAG

Translation (144 aa):
MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYAQLFAALIARTAKDID
VLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSVTHSHS
LPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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