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Report for CCDS20358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20358.1 Public Mus musculus 6 Zxdc 23 108 98 CCDS HistoryNCBI Gene:80292Re-query CCDS DB by CCDS ID:20358.1Re-query CCDS DB by GeneID:80292See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075117.9 ENSMUSP00000074619.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075117.9Link to Ensembl Protein Viewer:ENSMUSP00000074619.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075117Re-query CCDS DB by Protein ID:ENSMUSP00000074619
Original member Current member NCBI NM_173002.3 NP_766590.1 Accepted alive Link to Nucleotide Sequence:NM_173002.3Link to Protein Sequence:NP_766590.1Re-query CCDS DB by Nucleotide ID:NM_173002Re-query CCDS DB by Protein ID:NP_766590Link to BLAST:NP_766590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766590.1 858 Q8C8V1-1 858 100% 0 0

Chromosomal Locations for CCDS 20358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90369659 90370568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90372542 90372694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90372787 90372865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90373711 90373841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90378784 90378954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90381832 90382520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90384168 90384252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90398762 90398931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90400782 90400883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90402020 90402106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGACCTCCCGGCGGTGCTGGCCGCCCCGGCCACGCGCGGAGACCAACATGGCGGTGGCCCGAGCCGAC
TTCGCCGCGGCGCGGGGCCGTCCCTCGGTGCCGGTCCCGGGCGCCGTCGCCTGCTGCTGCTGAGGGGCCC
GGAAGATGGCGGGCCCGGGCCGCGTCCAGAGGAGGCCCCGGGGCCCAGCCCGCCGCCCCCGGAGGACGGC
GGCGACTCCTTCGTGGTACTGCTGGAAGTGCCGCGCGCGGCCGACACCCATGGTCAGGAGGAGGCCGAGC
CCGATTCGGGCGCGAGCCCCACGGAACAGGTCCCGGCCGCCGCCCCCGGCGCAGCTCTGGCAGGCACGGT
CACCATCCACAACCAGGACCTCCTGGTGCGCTTCGACCGCGGCGTCTTCACGCTGGCTGCGGCGCCCGCG
CCAGCCGCCCCGAGCCTGCATCCCGCGACCACCCCGGGCCTGGAGCCCTCGAGCGCTGCTGCGTCCCGCC
GCGGGCCGGTGGCCGCTAGCGCTGGCTCCCCGGCCTACCGCTGTCCGGAGCCGCAGTGCGCGCTGAGCTT
CGCCAAGAAGCACCAGTTGAAGGTGCACCTGCTGACGCACGGCAGCCTCCAGGGCCGGCGGCCCTTCAAG
TGCCCGCTGGATGGCTGCGGCTGGGCCTTCACCACCTCCTACAAGCTCAAACGGCACCTGCAGTCGCATG
ACAAGCTGCGTCCCTTTAGCTGCCCGGTGGGCGGCTGCGGCAAGAAGTTCACCACCGTCTACAACCTCAA
GGCGCACATGAAGGGCCACGAGCAGGAGAGCTTGTTCAAGTGCGAGGTGTGCGCCGAGCGCTTCCCCACA
CACGCCAAGCTCAACTCCCACCAGCGCAGCCACTTCGAGCCCGAGCGGCCTTACAAGTGTGATTTCCCCG
GCTGTGAGAAGACGTTCATCACAGTGAGTGCCCTGTTTTCCCATAATCGAGCCCACTTCAGGGAGCAAGA
GCTCTTTTCCTGCTCCTTTCCTGGGTGCAATAAACAATATGACAAAGCCTGCCGACTGAAAATTCACTTG
CGAAGTCACACAGGTGAAAGACCATTTATTTGTGACTCAGACAGTTGTGGCTGGACCTTCACCAGTATGT
CCAAACTTCTAAGACACAAAAGGAAACATGATGATGACCGGAGGTTCACTTGCCCTGTTGAAGGTTGTGG
CAAGTCATTCACTAGAGCAGAGCATCTGAAGGGCCACAGTATCACCCACCTGGGAACAAAGCCATTCGAA
TGCCCTGTGGAAGGGTGCTGTGCCAGGTTCTCAGCTCGCAGCAGTCTGTACATTCATTCTAAGAAACATC
TGCAGGACGTGGGTACTCCGAAAAGCCGCTGCCCAGTGTCCAGCTGCAACCGACTCTTCACCTCCAAGCA
TAGCATGAAGGCACACGTGGTGCGGCAGCACAGCCGGCGCCAAGATCTTGTACCTCAGCTGGAAGCTCCG
AGCTCTCTCACACCCAGCAGTGAACTGAGTAGCCCAGGCCAAAGTGAGCTCACCAACATAGATCTCGCAG
CACTTTTCTCTGACACACCTGCTAATAGCAGCAGTTCAACAGCTGGGTCGGATGAAGCACTGAACTCTGG
GATCCTCACCATTGATGTCACTTCTGTGAGCTCTTCTCTGGGAGGGAATCTCCCTACTAACAATAACTCC
TTAGGACCAATGGATCCACTCGTTCTAGTGGCCCACGGTGATATGCCTCCAAGTTTGGACAGTCCTCTTG
TTCTTGGGACATCGGCCACGGTTCTCCAACCAGGCAGCTTCAGTGCAGATGATTCACAGGCCATGAGCAC
AGGAGCAGTAGGCTGCCTGGTGGCTCTGCCTGTGAGGAACTTGAATCAAGACTCTCCAGCTTTGACCCCC
AGCAATAACTTGACAGCACCTGGTACCACACCAACTTCTTCAGACACCACCCAAGAAACTGGCAGTGTGC
CAGATCTGCTGGTTCCAATAAAGGTGGAACAAGACTTGTCTCCTGTCCCAGATGTGGTCCAGGGGCAGAA
AGAAAGCCATGGGCCATCCCAATCTGTGCTGTCCAGCTCTACAGAGAGGCCAGGGGCTCAGAAGGACTCA
GAGCTCAGTGCTGGCACAGGCAGTCTCTACTTGGAAAGTGGGGGCTCAGCAAGAACTGATTACCGAGCCA
TTCAACTAGTCAAGAAAAAAAAGCAGAAAGGAACTGGGAGCGATGAAGGAGCCTCTGACTCTGCTCACAG
GAAAGTAAAAGGTGGCACGATCAACCCTCCTCATGTCCACTCAGGCCAGCACAGTTGTTTCTGTGGAACT
CTCATGGTACCCAGTGGAGGTCTGACAGTGCCAGCCCCTGCAGCTGGGCTGCAGTGTGTCCAGATCCCTG
TTCTGCAGGATGACCCCTCAGGTGAAGGAGGCTTACCACTGGGCCTCAGCCCACAGCGCTCTGCCTTCCA
CCCCTACTTCACCGTGGATCTGCCTGTCTACGTCCTCCAGGAGGTGCTTCCAGCACCTGGAGGTTTTGCT
GGACTGGAGACTGCACAGGTACCAGGAAGTACTATCAACCTGCGGGACCTTGAGTGA

Translation (858 aa):
MDLPAVLAAPATRGDQHGGGPSRLRRGAGPSLGAGPGRRRLLLLRGPEDGGPGPRPEEAPGPSPPPPEDG
GDSFVVLLEVPRAADTHGQEEAEPDSGASPTEQVPAAAPGAALAGTVTIHNQDLLVRFDRGVFTLAAAPA
PAAPSLHPATTPGLEPSSAAASRRGPVAASAGSPAYRCPEPQCALSFAKKHQLKVHLLTHGSLQGRRPFK
CPLDGCGWAFTTSYKLKRHLQSHDKLRPFSCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEVCAERFPT
HAKLNSHQRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCNKQYDKACRLKIHL
RSHTGERPFICDSDSCGWTFTSMSKLLRHKRKHDDDRRFTCPVEGCGKSFTRAEHLKGHSITHLGTKPFE
CPVEGCCARFSARSSLYIHSKKHLQDVGTPKSRCPVSSCNRLFTSKHSMKAHVVRQHSRRQDLVPQLEAP
SSLTPSSELSSPGQSELTNIDLAALFSDTPANSSSSTAGSDEALNSGILTIDVTSVSSSLGGNLPTNNNS
LGPMDPLVLVAHGDMPPSLDSPLVLGTSATVLQPGSFSADDSQAMSTGAVGCLVALPVRNLNQDSPALTP
SNNLTAPGTTPTSSDTTQETGSVPDLLVPIKVEQDLSPVPDVVQGQKESHGPSQSVLSSSTERPGAQKDS
ELSAGTGSLYLESGGSARTDYRAIQLVKKKKQKGTGSDEGASDSAHRKVKGGTINPPHVHSGQHSCFCGT
LMVPSGGLTVPAPAAGLQCVQIPVLQDDPSGEGGLPLGLSPQRSAFHPYFTVDLPVYVLQEVLPAPGGFA
GLETAQVPGSTINLRDLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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