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Report for CCDS20354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20354.1 Public Mus musculus 6 V1ra8 23 108 98 CCDS HistoryNCBI Gene:113850Re-query CCDS DB by CCDS ID:20354.1Re-query CCDS DB by GeneID:113850See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078371.5 ENSMUSP00000077479.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078371.5Link to Ensembl Protein Viewer:ENSMUSP00000077479.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078371Re-query CCDS DB by Protein ID:ENSMUSP00000077479
Original member Current member NCBI NM_053223.1 NP_444453.1 Accepted alive Link to Nucleotide Sequence:NM_053223.1Link to Protein Sequence:NP_444453.1Re-query CCDS DB by Nucleotide ID:NM_053223Re-query CCDS DB by Protein ID:NP_444453Link to BLAST:NP_444453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444453.1 279 Q9EQ48 279 100% 0 0

Chromosomal Locations for CCDS 20354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90202817 90203656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGAATAAAGACCATACACTGTACTGTAGTGTTTACATCAGAAATGCCTTCTTCTCTGAGATAGGCATCG
GGATCTCAGCCAACAGCTGCCTTCTCCTCTTCCACACCTTCATGTTCATTCGTGGGCACAGGCCCAGACT
CACGGACTTGCCCATTGGCTTTGTGGCCCTAATACACCTAGTGATGCTGCTACTTGCAGCATATATAACA
GAAGACTTTTTTATGTCTTCAGGAGGATGGGACGACATCACATGTAAACTAGTCATTTTCTTGCACAGGT
TTTTCAGGAGCCTCTCTGTTTGTGCCACTTGCCTGTTGAGTGTCTTCCAGGCCATCATCCTCTGCCCTCA
AAGCTCTCACTTAGCAAAGCTCAAACAGAATTCCCCACATCAGCTCTCATATTTTTTTATTTTTCTGAGT
ATCTTCTATACATCTATCAGCAGCCAAATTTTAATAGCAGCTATTCCCACACAAAATATCACCTTTGTTA
ATCTTATATATATCACAAATTCTTGTTCTTTTCTACCCTTGAGTTCATCAATGCAACATACCTTTTCCAC
ACTGTTGACTTTCAGGAATGTCTTTGTTATTGGTCTCATGGGCCTCTCGACATGCTACATGGCTACTCTC
TTGTGCAGGCATAAGACTCGGTCCCAGCGCCTTCAGAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGC
AACGAGCCCTCAGGACCATTCTAATGCTTATGAGCTTCTTTCTGCTGATGTCAACATTTGACAGCATCAT
CTCCTACTCAAGAACTATTATTACAGGGAAATCCACTGCCCTATTGTGTCCAGATTCTTGTCGCTCATAG

Translation (279 aa):
MNKDHTLYCSVYIRNAFFSEIGIGISANSCLLLFHTFMFIRGHRPRLTDLPIGFVALIHLVMLLLAAYIT
EDFFMSSGGWDDITCKLVIFLHRFFRSLSVCATCLLSVFQAIILCPQSSHLAKLKQNSPHQLSYFFIFLS
IFYTSISSQILIAAIPTQNITFVNLIYITNSCSFLPLSSSMQHTFSTLLTFRNVFVIGLMGLSTCYMATL
LCRHKTRSQRLQNSKLSPKATPEQRALRTILMLMSFFLLMSTFDSIISYSRTIITGKSTALLCPDSCRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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