NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20349.1 Public Mus musculus 6 Vmn1r47 23 108 98 CCDS HistoryNCBI Gene:113846Re-query CCDS DB by CCDS ID:20349.1Re-query CCDS DB by GeneID:113846See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074881.1 ENSMUSP00000074422.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074881.1Link to Ensembl Protein Viewer:ENSMUSP00000074422.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000074881Re-query CCDS DB by Protein ID:ENSMUSP00000074422
Original member Current member EBI ENSMUST00000227811.1 ENSMUSP00000153727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227811.1Link to Ensembl Protein Viewer:ENSMUSP00000153727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227811Re-query CCDS DB by Protein ID:ENSMUSP00000153727
Original member Current member EBI ENSMUST00000228680.1 ENSMUSP00000154134.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228680.1Link to Ensembl Protein Viewer:ENSMUSP00000154134.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228680Re-query CCDS DB by Protein ID:ENSMUSP00000154134
Original member Current member EBI ENSMUST00000227229.1 ENSMUSP00000154255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227229.1Link to Ensembl Protein Viewer:ENSMUSP00000154255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227229Re-query CCDS DB by Protein ID:ENSMUSP00000154255
Original member Current member NCBI NM_053219.2 NP_444449.2 Accepted alive Link to Nucleotide Sequence:NM_053219.2Link to Protein Sequence:NP_444449.2Re-query CCDS DB by Nucleotide ID:NM_053219Re-query CCDS DB by Protein ID:NP_444449Link to BLAST:NP_444449.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444449.2 310 Q9EQ51 310 99.0323% 0 3

Chromosomal Locations for CCDS 20349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90021888 90022820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAATGAGAACAGCAGACTACACACTCATTCTAACATAAGGAACACCTTTTTCTCTGAAATTGGCATTG
GGATCTCAGGCAACAGTTTCCTTCTTCTCTTCCATATCATCAAGTTCTTTCGTGGGCACAGGCCCAGACT
CACTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTACTGATGCTACTGGTTGCAGCGGTCATAGCC
ACAGACATTTTTATTTCTTGGAGGGGATGGAATGACATCATATGTAAATTTCTTGTCTACCTGTACAGAA
GTTTGAGGGGTCTCTCCCTTTGTACCACCAGCATGTTGAGTGTCCTCCAGGCCATAATCCTCAGTCCCAG
AAGCTACTGTTTAGCTAAGTTCAAGCGCAAATCTTCTCATAACATCTCCTGTGCCATTATTTTCCTGAGT
GTCCTGTATATGTCAATTAGCAGTCACCTCTTTATATCCATCACTGCCACCCTCAATTTGACCATGAATA
ACTTTCTTTATGTTTCTCAGTCCTGCTCTCTTCTACCCTTGAGTTACCTCATGCAAAGCATGTATTCTAC
ACTGCTGGTCCTCAGGGAAGTCTTTCTTATTGGTCTCATGGTCCTCTCAACTTCATACATGGTGGCCCTC
TTGTGCATGCACAGGAAACAGGCCCAGAATCTTCAGGGTACCAGTCTTTCCCTCAAAGCATCCGCAGAGC
AAAGGGCCACCCAGACCATCCTGATGCTCATGACCTTCTTTGTGCTGATGTCCATCTTCGACAGCATTGT
CTCCTCCTCAAGAGCTATGTTCTTGGATGATTCAACATGTTATTCTATATATATCTTTGTGATGCACATT
TATGCCACAGTTAGCCCTTTTGTATTTATGAGCACTGAAAAACATTTAGTTAACTTCTTTAGGTCCATGT
GTGAGTGGATAATAAATATGTGA

Translation (310 aa):
MNENSRLHTHSNIRNTFFSEIGIGISGNSFLLLFHIIKFFRGHRPRLTDLPIGLLSLIHLLMLLVAAVIA
TDIFISWRGWNDIICKFLVYLYRSLRGLSLCTTSMLSVLQAIILSPRSYCLAKFKRKSSHNISCAIIFLS
VLYMSISSHLFISITATLNLTMNNFLYVSQSCSLLPLSYLMQSMYSTLLVLREVFLIGLMVLSTSYMVAL
LCMHRKQAQNLQGTSLSLKASAEQRATQTILMLMTFFVLMSIFDSIVSSSRAMFLDDSTCYSIYIFVMHI
YATVSPFVFMSTEKHLVNFFRSMCEWIINM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH