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Report for CCDS20260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20260.1 Public Mus musculus 6 Gcfc2 23 108 98 CCDS HistoryNCBI Gene:330361Re-query CCDS DB by CCDS ID:20260.1Re-query CCDS DB by GeneID:330361See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043195.10 ENSMUSP00000035644.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043195.10Link to Ensembl Protein Viewer:ENSMUSP00000035644.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043195Re-query CCDS DB by Protein ID:ENSMUSP00000035644
Original member NCBI NM_177884.3 NP_808552.2 Updated not alive Link to Nucleotide Sequence:NM_177884.3Link to Protein Sequence:NP_808552.2Re-query CCDS DB by Nucleotide ID:NM_177884Re-query CCDS DB by Protein ID:NP_808552
Current member NCBI NM_177884.4 NP_808552.2 Accepted alive Link to Nucleotide Sequence:NM_177884.4Link to Protein Sequence:NP_808552.2Re-query CCDS DB by Nucleotide ID:NM_177884Re-query CCDS DB by Protein ID:NP_808552Link to BLAST:NP_808552.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808552.2 769 Q8BKT3-1 769 100% 0 0

Chromosomal Locations for CCDS 20260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 81923707 81923938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81925766 81925894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81930668 81930892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81932814 81932911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81935906 81936021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81939380 81939566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81941318 81941441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81942929 81943010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81943429 81943541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81944321 81944520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81946463 81946613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81948263 81948381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81949909 81949985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81951720 81951786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81953274 81953420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81956831 81956955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 81957954 81958071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGGCTCTCAGGCCCCAGAGGACTTTCAGGCGGCGCCAGGTCGAGTCCAGCGATAGCGATAGCGATAGCG
ACGGCGCGAAGGAGCAGAGTGCGGAGGAGCCGGCGTCTGCCGGCGGCCGAACAGAGGGAGCGGAGCGGCC
GCGCGGGGCCCGCAGCGCCCGGGGCCGAGGTCGGGTCTGGGCGAGTTCCCGCCGCAGCCCGGGAGCTGCT
CCCCGCGGGGACGGCGGAGCAGAATGCAGAACAGCTGAGCTCTCAACGGATGAAGAGGAAGGAACACATA
CCTTGACAGGAAGTAAGGGTGATCGGAGTCCGTCCTCTGATAGCTCTTGCTCTCTGGAAGAAAGAGACGT
TTCACCCATAGTTGAGATCCCCGATGCAGCTTTTATTCAGGCAGCCCGCAGAAAACGGGAGTTGGCCAGG
ACCCCAGGGGACTACATTTCATTGGATGTAAACCACTCCTGCTCCACTTCTGACTGTAAGAGAAGCAATG
AAGAGGACCCAGAGAGCGATCCTGATGACCACGAAAAGAGAATACTGTTTACCCCAAAGCCTCAAACACT
CCGGCAAAGAATGGCTGAAGAAACGTCAATCAGGAGTGAGGAATCAAGTGAAGAGAGTCAGGAAGATGAA
AACCAAGACATCTGGGAGCAGCAGCAGATGAGGAAAGCAGTCAGGATCCCGGCGGGACAAAATACAGACC
TTTCCCACAGCAGTAAGTCTCAAACCCTGAAGAAGTTTGATACTTCCATTTCATTTCCACCGGTAAATTT
GGAAATTATAAAGAAACAGTTAAATAATAGATTAACATTACTACAGGAGTCTCATCGCTCACACCAGAGA
GAATATGAAAAATATGAACAAGACATCAAGAGTTCAAAGACGGCTATCCAGAATCTTGAGAGTGCATCAG
ACCATGCTCAAAACTACAGATTCTACAGGGGCATGAAAAGTTATGTGGAAAATATAATTGATTGTCTAAA
TGAAAAGATTGTCAGCATTGTGGAACTAGAATCATCCATGTACACGTTGCTTTTAAAACGGTCAGAAGCA
CTTTTGAAACGCAGGCAAGATGAATTAAAATGCGAATCATCATATTTGCAGCAGTTATCACGCAAAGATG
AGACATCGGCAAATGGAAGCTTGGCTGTGGATGAAAAGGATCAACGGATTTTAGAAGAGATTGAAGCTCG
GAGGATGCAGAGAAGACAGGCCAGGGAGCTCTCGGGCAGCTGTGACCATCAGGAAGGGATGTCTAGTGAT
GATGAGCTGTCTCCTGCAGAGATGACTAACTTCCACAAGTGCCAAGGTGACATTTTACAGGATTGTAAGA
AAGTTTTTGAAGATGTGCATGATGATTTTTGTAACGTCCAGAATATTTTATTGAAATTTCAGCAGTGGCG
AGAAAAGTTTCCTGATTCCTACTATGAAGCCTTCGTTGGTTTCTGCTTACCAAAGCTTTTAAGTCCCCTG
ATACGAGTTCAGTTGCTTGACTGGAATCCTCTTAAGATGGACTCCATAGGTCTAGACAAGATGCCCTGGT
TCACAGCTATAACAGAGTTTATGGAGAGCAGCATGGACGATATAGGGAAGGAAGATGGTTCTGATAAAAA
AATCTTGGCTGCTGTCATCAACAAAACAGTTGTTCCTCGACTTACAGATTTTGTAGAGACCATTTGGGAT
CCCCTGTCAACCTCACAGACAAGAAGTTTAACAGTGCACTGCAGAGTGGCTTTTGAACAGTTCGCTTCTG
AAAATGAAGTTAGTAAAAATAAACAGGATTTACTTAAATCTATTGTTGCAAGAATGAAGAAGTCAATAGA
AGATGATATTTTTATTCCTCTATACCCAAAGAGCTCTGAAGAAGGAAAAATGTCACCACACTCCAAGTTC
CAAGAAAGACAGTTCTGGGGAGCTCTAAAGCTCTTCCGAAATATTCTTCTTTGGAATGGCCTTCTCCCAG
ATGACACCTTGCAAGATCTGGGACTGGGGAAGCTGCTGAATCGCTACCTTATCATCTCTCTTACTAATGC
CGTCCCTGGACCAGATGTGGTTAAAAAGTGCAGCCAGATAGCAGCATGTCTACCAGAAAGATGGTTTGAG
AACTCTGCTATGAGGACATCAATTCCCCAGCTAGAAAACTTCATTAAGTTTTTGTTGCAGTCTGCACAGA
AATTATCCTCAAGTGAATTCAGGAATGAAGTCAGTGAAATAATTCTTATCCTGGTGAAGGTAAAAGCTCT
GACTCAAGCCGAATCCCTCAGAGAAGAGCGTCCCCTGGAGCCCCTCCCAGCCCAGAGTACAGGTGTTTGA

Translation (769 aa):
MALRPQRTFRRRQVESSDSDSDSDGAKEQSAEEPASAGGRTEGAERPRGARSARGRGRVWASSRRSPGAA
PRGDGGAECRTAELSTDEEEGTHTLTGSKGDRSPSSDSSCSLEERDVSPIVEIPDAAFIQAARRKRELAR
TPGDYISLDVNHSCSTSDCKRSNEEDPESDPDDHEKRILFTPKPQTLRQRMAEETSIRSEESSEESQEDE
NQDIWEQQQMRKAVRIPAGQNTDLSHSSKSQTLKKFDTSISFPPVNLEIIKKQLNNRLTLLQESHRSHQR
EYEKYEQDIKSSKTAIQNLESASDHAQNYRFYRGMKSYVENIIDCLNEKIVSIVELESSMYTLLLKRSEA
LLKRRQDELKCESSYLQQLSRKDETSANGSLAVDEKDQRILEEIEARRMQRRQARELSGSCDHQEGMSSD
DELSPAEMTNFHKCQGDILQDCKKVFEDVHDDFCNVQNILLKFQQWREKFPDSYYEAFVGFCLPKLLSPL
IRVQLLDWNPLKMDSIGLDKMPWFTAITEFMESSMDDIGKEDGSDKKILAAVINKTVVPRLTDFVETIWD
PLSTSQTRSLTVHCRVAFEQFASENEVSKNKQDLLKSIVARMKKSIEDDIFIPLYPKSSEEGKMSPHSKF
QERQFWGALKLFRNILLWNGLLPDDTLQDLGLGKLLNRYLIISLTNAVPGPDVVKKCSQIAACLPERWFE
NSAMRTSIPQLENFIKFLLQSAQKLSSSEFRNEVSEIILILVKVKALTQAESLREERPLEPLPAQSTGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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