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Report for CCDS20103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20103.1 Public Mus musculus 6 Atp6v0e2 23 108 98 CCDS HistoryNCBI Gene:76252Re-query CCDS DB by CCDS ID:20103.1Re-query CCDS DB by GeneID:76252See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040361.7 ENSMUSP00000044110.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040361.7Link to Ensembl Protein Viewer:ENSMUSP00000044110.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040361Re-query CCDS DB by Protein ID:ENSMUSP00000044110
Original member Current member NCBI NM_133764.3 NP_598525.1 Accepted alive Link to Nucleotide Sequence:NM_133764.3Link to Protein Sequence:NP_598525.1Re-query CCDS DB by Nucleotide ID:NM_133764Re-query CCDS DB by Protein ID:NP_598525Link to BLAST:NP_598525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598525.1 81 Q91XE7 81 100% 0 0

Chromosomal Locations for CCDS 20103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48537751 48537854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48539224 48539271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48540040 48540133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGACAGCCCATTCCTTTGCCCTCCCTGTCATCATCTTCACCACATTCTGGGGCCTCATCGGCATCGCTG
GGCCCTGGTTCGTGCCCAAAGGACCCAACCGCGGGGTGATCATCACCATGCTGGTAGCTACTGCTGTCTG
CTGTTACCTCTTCTGGCTCATCGCCATCTTGGCCCAACTGAACCCCCTGTTTGGGCCACAACTGAAGAAT
GAGACCATCTGGTACGTGCGTTTCCTGTGGGAGTGA

Translation (81 aa):
MTAHSFALPVIIFTTFWGLIGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKN
ETIWYVRFLWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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