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Report for CCDS19944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19944.1 Public Mus musculus 6 Lmod2 23 108 98 CCDS HistoryNCBI Gene:93677Re-query CCDS DB by CCDS ID:19944.1Re-query CCDS DB by GeneID:93677See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031694.7 ENSMUSP00000031694.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031694.7Link to Ensembl Protein Viewer:ENSMUSP00000031694.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031694Re-query CCDS DB by Protein ID:ENSMUSP00000031694
Original member Current member NCBI NM_053098.2 NP_444328.1 Accepted alive Link to Nucleotide Sequence:NM_053098.2Link to Protein Sequence:NP_444328.1Re-query CCDS DB by Nucleotide ID:NM_053098Re-query CCDS DB by Protein ID:NP_444328Link to BLAST:NP_444328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444328.1 550 Q3UHZ5 550 100% 0 0

Chromosomal Locations for CCDS 19944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24597883 24598155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24603301 24604653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24605186 24605212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGTCTACGTTTGGCTACAGAAGGGGACTTAGTAAATATGAATCCATTGATGAGGATGAACTTCTGGCCT
CCCTCTCACCTGAAGAGCTGAAGGAGCTTGAGAGGGAGCTGGAAGACATTGAACCTGACCGAAACCTTCC
TGTGGGGCTAAGGCAAAAGAGTCTGACAGAGAAAACCCCAACAGGAAACTTCAGCCGAGAGGCGCTGATG
GCGTATTGGGAAAAGGAGTCCCAAAAACTTTTGGAGAAGGAACGGCTGGGGGAATGTGGAAAGGTTGCAG
AAGAAGACAAGGAAGAGAGTGAAGAGGAACTAATTTTCACAGAGAGCAACAGCGAAGTCTCTGAGGAGGT
GTGTACAGAAGATGAGGAAGAGTCTCAGGAGGAAGAAGAGGATAGCGAGGAAGAAGAGGACAGTGAGGAA
GAGGAAGAGACAACAGAAGCCACAAAACATATTAATGGAACTGTAAGCTACAATAGTGTTAATACTGATA
ACTCTAAGCCAAAGACATTTAAAAGCCAAATAGAAAATATAAATTTAACCAACGGCAACAGTGGAAGAAC
ACAGAGGAACTCCGAGTCACCAGCCGCCATTCACCCTTGTGGAAATCCCACTGTTATTGAGGATGCTCTG
GAAAAGATTAGAAACAATGACCCTGATACGACAGAAGTTAATCTGAACAATATAGAGAACATCACCACCC
AGACCTTATCCCGATTTGCTGAAGCTCTCAAGGAGAACACAGTGGTGAAGACGTTCAGCCTGGCCAACAC
GCACGCTGATGACGCCGCGGCGATTGCCATTGCAGACATGCTCAAGGTTAACGAGCACATTACCAGCGTA
AACGTGGAGTCCAACTTCATCACTGGCAAGGGGATCCTGGCCATCATGAGAGCCCTGCAGCACAACACGG
TGCTCACGGAGCTGCGCTTCCACAACCAGCGGCACATCATGGGCTCTCAGGTGGAGATGGAAATTGTCAA
GCTGCTCAAAGAGAATACCACGCTGCTGAGGCTGGGCTACCATTTTGAGCTCCCAGGACCAAGAATGAGT
ATGACGAGTATTTTAACAAGGAATATGGATAAACAGAGGCAAAAACGCATGCAGGAGCAAAAACAGCAAG
AGGGGCACGATGGAGGAGCTGCTCTTAGGACCAAAGTCTGGCAAAGAGGGACACCTGGCTCTTCTCCATA
TGCATCTCCGAGACAGTCTCCCTGGTCATCTCCCAAAGTCTCCAAGAAAGTCCACACTGGGAGGAGCAGA
CCTCCATCTCCTGTGGCCCCGCCTCCACCCCCTCCCCCTCCTCCTCTTCCTCCCCACATGCTGCCTCCTC
CCCCTCCTCCCCCTGCTCCTCCACTCCCAGAGAAAAAGCTCATCACCAGAAACATTGCAGAAGTCATTAA
ACAACAGGAAAGTGCCCAGCGCGCCCTACAAAATGGACAGCGAAAGAAAAAAGGGAAAAAGGTTAAGAAA
CAACCAAACAATATCCTAAAGGAAATTAAGAATTCTCTGAGGTCAGTGCAAGAGAAGAAAATGGAAGACA
GCTCCCGACCCTCTACCCCACAGAGATCAGTTCATGAGAACCTCATGGAAGCCATTCGGGGGAGCAGTAT
AAGACAGCTACGGAGGGTGGAAGTTCCCGAAGCTCTGAGATAG

Translation (550 aa):
MSTFGYRRGLSKYESIDEDELLASLSPEELKELERELEDIEPDRNLPVGLRQKSLTEKTPTGNFSREALM
AYWEKESQKLLEKERLGECGKVAEEDKEESEEELIFTESNSEVSEEVCTEDEEESQEEEEDSEEEEDSEE
EEETTEATKHINGTVSYNSVNTDNSKPKTFKSQIENINLTNGNSGRTQRNSESPAAIHPCGNPTVIEDAL
EKIRNNDPDTTEVNLNNIENITTQTLSRFAEALKENTVVKTFSLANTHADDAAAIAIADMLKVNEHITSV
NVESNFITGKGILAIMRALQHNTVLTELRFHNQRHIMGSQVEMEIVKLLKENTTLLRLGYHFELPGPRMS
MTSILTRNMDKQRQKRMQEQKQQEGHDGGAALRTKVWQRGTPGSSPYASPRQSPWSSPKVSKKVHTGRSR
PPSPVAPPPPPPPPPLPPHMLPPPPPPPAPPLPEKKLITRNIAEVIKQQESAQRALQNGQRKKKGKKVKK
QPNNILKEIKNSLRSVQEKKMEDSSRPSTPQRSVHENLMEAIRGSSIRQLRRVEVPEALR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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