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Report for CCDS19943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19943.1 Public Mus musculus 6 Asb15 23 108 98 CCDS HistoryNCBI Gene:78910Re-query CCDS DB by CCDS ID:19943.1Re-query CCDS DB by GeneID:78910See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031696.9 ENSMUSP00000031696.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031696.9Link to Ensembl Protein Viewer:ENSMUSP00000031696.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031696Re-query CCDS DB by Protein ID:ENSMUSP00000031696
Original member Current member EBI ENSMUST00000117688.1 ENSMUSP00000112965.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117688.1Link to Ensembl Protein Viewer:ENSMUSP00000112965.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117688Re-query CCDS DB by Protein ID:ENSMUSP00000112965
Original member Current member NCBI NM_080847.3 NP_543123.2 Accepted alive Link to Nucleotide Sequence:NM_080847.3Link to Protein Sequence:NP_543123.2Re-query CCDS DB by Nucleotide ID:NM_080847Re-query CCDS DB by Protein ID:NP_543123Link to BLAST:NP_543123.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543123.2 583 Q8VHS6 583 100% 0 0

Chromosomal Locations for CCDS 19943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24556508 24556614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24558509 24558561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24558648 24558779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24559150 24559308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24562492 24562737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24564246 24564417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24565919 24566489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24567122 24567275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24570619 24570776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGATATTAATGATGATTCTAACGATGACCATCTTGCAAGTTATGACATCCAGCTCTGTATTCAGGAAT
CCATTGAAGCGAGCCAGGCTATATTTCATCCTAAAAGATTGGTACAACTAAGTGATCAAAACAGAAAGCT
TGTGGAGGCCATAAGGCAAGGTCGCATTTTTGAGCTCCAGGAGTATGTGCAATATAAATATGCACTGGAA
GAAGCAGATGAGAAAGGATGGTTCCCATTGCATGAAGCTGTAGTTCAACCCATTCAACAGATACTTGAGA
CGGTTCTGGATGCATCCTATAAGACACTCTGGGAGTTCAAGACCTGTGATGGAGAAACACCCTTGACCCT
GGCAGTCAAAGCTGGTCTGGTGGAAAATGTCAAGACGTTGCTAGACAAAGGGGTCTGGCCCAACACCAAA
AATGACAAAGGAGAGACACCTCTTCTGATTGCTATAAAGAGGGGCTCCTATGACATGGTCTCTGCACTGA
TTAAATACAACACCAGCCTTGACCAGCCCTGTGTCAAACGATGGTCAGCAATGCATGAGGCAGCTAAGCA
AGGTCGCAAAGATATTATCACGCTGCTATTGAATCACAGAGGCAACGTCCACTTGAGAGACGGATTCGGA
GTCACACCCTTAGGAGTTGCTGCTGAGTATGGCCACTGTGACGTGTTAGAACATCTTATTCACAAAGGTG
GTGATGTGTTTGCTTTGGCGGATGATGGGGCATCTGTGCTATTCGAGGCAGCAGGAGGAGGAAACCCTGA
CTGCATCTCCCTCCTGCTGAAGTACGGAGGAAGCGGCAATGTGCCCAACAGAGCAGGGCATCTTCCCATA
CACCGAGCTGCCTATGAGGGACATTATCTTGCTCTGAAATACCTTATCCCAGTAACATCCAAACATGCAA
TTCAGAAAAGCGGCCTCACTCCAATTCACTCAGCAGCAGAGGGACAAAACGCCCAGTGCCTTGAATTGCT
CATTGAGAATGGTTTTGATGTTAATGCCCTGCTTGCCGACCACATTTCCCAGAGTTACGATGATGAGAGA
AAGACTGCGCTATACTTCGCCGTCTCCAATAATGATATCCACTGCACAGAAGTCCTTCTGGCTGCAGGTG
CAGACCCCAACTTGGATCCCCTCAACTGTCTCCTTGTGGCGGTGAGGGCCAATCGACATGAAATCGTCCG
GCTGCTTCTCTCCTATGGGGCTAACGTCAATTGTTATTTTATGCATGTGAATGACACTCGCTTCCCCAGT
GCCATTCAGTATGCCCTAAATGATGAGATTATGCTGAGGCTCCTGCTGAATAATGGTTACCAAGTGGAGC
TATGTTTTGACTGCATGCACGGAAACATCTTTGGGAATTCATTTGTGTGGTCAGAGACTGAGGAGGAGGG
ACTGCCAGGGTGGACATCATGCATAATAAAAGATAATCCGTTCTGTGAGTTTATTACAGTTCCGTGGATG
AAGCACCTGGTGGGCGGCATTGTCCGCATACTGATAGATTACATGGATTACGTCCCTCTGTGTGCAAAAC
TGAAGTCTGTGCTAGAAGTACAGAGAGAATGGCCAGAAATACGCCAAATAATAGAGAATCCTTGCTCCCT
AAAGCATCTGTGCCGATTAAAAATTCGCCGAGTTATGGGACTGCAGCGACTCTGCCAGCCAGCCTCCATA
CAGATGCTTCCTCTCCCGGCGGCGATGCGAAGATACTTATTATTTAAAGAGTTTGACCTCTACGGACAGT
AG

Translation (583 aa):
MDINDDSNDDHLASYDIQLCIQESIEASQAIFHPKRLVQLSDQNRKLVEAIRQGRIFELQEYVQYKYALE
EADEKGWFPLHEAVVQPIQQILETVLDASYKTLWEFKTCDGETPLTLAVKAGLVENVKTLLDKGVWPNTK
NDKGETPLLIAIKRGSYDMVSALIKYNTSLDQPCVKRWSAMHEAAKQGRKDIITLLLNHRGNVHLRDGFG
VTPLGVAAEYGHCDVLEHLIHKGGDVFALADDGASVLFEAAGGGNPDCISLLLKYGGSGNVPNRAGHLPI
HRAAYEGHYLALKYLIPVTSKHAIQKSGLTPIHSAAEGQNAQCLELLIENGFDVNALLADHISQSYDDER
KTALYFAVSNNDIHCTEVLLAAGADPNLDPLNCLLVAVRANRHEIVRLLLSYGANVNCYFMHVNDTRFPS
AIQYALNDEIMLRLLLNNGYQVELCFDCMHGNIFGNSFVWSETEEEGLPGWTSCIIKDNPFCEFITVPWM
KHLVGGIVRILIDYMDYVPLCAKLKSVLEVQREWPEIRQIIENPCSLKHLCRLKIRRVMGLQRLCQPASI
QMLPLPAAMRRYLLFKEFDLYGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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