NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19907.1 Public Mus musculus 6 Asns 23 108 98 CCDS HistoryNCBI Gene:27053Re-query CCDS DB by CCDS ID:19907.1Re-query CCDS DB by GeneID:27053See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031766.11 ENSMUSP00000031766.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031766.11Link to Ensembl Protein Viewer:ENSMUSP00000031766.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031766Re-query CCDS DB by Protein ID:ENSMUSP00000031766
Original member Current member EBI ENSMUST00000115542.7 ENSMUSP00000111204.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115542.7Link to Ensembl Protein Viewer:ENSMUSP00000111204.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115542Re-query CCDS DB by Protein ID:ENSMUSP00000111204
Original member NCBI NM_012055.4 NP_036185.1 Updated not alive Link to Nucleotide Sequence:NM_012055.4Link to Protein Sequence:NP_036185.1Re-query CCDS DB by Nucleotide ID:NM_012055Re-query CCDS DB by Protein ID:NP_036185
Current member NCBI NM_012055.5 NP_036185.1 Accepted alive Link to Nucleotide Sequence:NM_012055.5Link to Protein Sequence:NP_036185.1Re-query CCDS DB by Nucleotide ID:NM_012055Re-query CCDS DB by Protein ID:NP_036185Link to BLAST:NP_036185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036185.1 561 Q61024 561 100% 0 0

Chromosomal Locations for CCDS 19907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 7675315 7675524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7675993 7676148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7676235 7676316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7677231 7677331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7677940 7678046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7680085 7680211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7681250 7681377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7681934 7682035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7682271 7682456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7685169 7685406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7689252 7689500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGTGTGGCATCTGGGCCCTCTTCGGCAGCGATGACTGCCTTTCCGTGCAGTGTCTGAGTGCGATGAAGA
TCGCGCACAGGGGGCCAGATGCATTTCGCTTTGAGAATGTCAATGGATACACCAACTGCTGCTTTGGCTT
TCACCGCTTGGCTGTGGTTGACCCGCTGTTTGGAATGCAGCCGATAAGAGTGAGGAAATACCCTTATTTG
TGGCTCTGTTACAATGGTGAAATCTACAACCACAAGGCGCTACAGCAACGTTTTGAATTTGAATATCAGA
CCAATGTGGATGGTGAGATTATCCTCCACCTCTATGACAAAGGAGGCATCGAGAAAACCATCTGTATGCT
GGACGGGGTGTTTGCATTCATCTTACTGGACACTGCCAATAAGAAAGTATTTCTGGGCAGAGACACCTAT
GGAGTCAGGCCCTTGTTTAAAGCCATGACAGAAGATGGGTTTCTGGCTGTGTGTTCAGAAGCTAAAGGCC
TTGTTTCCTTAAAACACTCCACCACTCCCTTCTTAAAAGTGGAGCCCTTCCTTCCTGGACACTATGAAGT
TTTGGATTTAAAACCAAATGGCAAAGTTGCGTCTGTGGAAATGGTCAAATACCATCACTGTACGGATGAA
CCATTGCATGCCATCTATGACAGCGTGGAGAAACTCTTCCCAGGCTTTGACCTAGAGACCGTGAAGAACA
ATCTGCGTATCCTTTTTGACAACGCTATCAAGAAACGCTTGATGACAGACCGGAGGATTGGCTGCCTTTT
ATCAGGGGGCCTGGACTCGAGCTTGGTTGCTGCCTCTCTGCTGAAGCAACTCAAGGAGGCCCAAGTTCAG
TATCCTCTCCAGACATTTGCTATTGGCATGGAGGACAGCCCCGATCTCCTGGCCGCTAGAAAGGTGGCAA
ATTATATTGGAAGCGAGCATCATGAAGTCCTTTTTAACTCTGAAGAAGGCATTCAGGCCCTGGATGAAGT
CATATTTTCCTTGGAAACTTATGATATTACGACAGTTCGGGCATCTGTGGGCATGTATTTAATTTCCAAG
TATATTCGGAAGAACACAGACAGCGTGGTGATCTTCTCCGGAGAGGGGTCAGATGAACTTACACAGGGCT
ATATATATTTCCACAAGGCTCCTTCCCCTGAGAAGGCCGAGGAGGAGAGTGAGAGACTGCTGAAGGAACT
CTACCTGTTTGATGTTCTCCGGGCCGACCGCACTACTGCTGCACACGGTCTCGAACTGAGAGTCCCCTTT
CTGGATCATCGGTTTTCTTCCTATTACCTGTCTCTGCCGCCAGATATGAGAATTCCAAAAAATGGCATAG
AAAAACATCTCCTGAGAGAGACTTTTGAGGACTGCAACCTGCTACCCAAAGAGATTCTCTGGCGACCCAA
AGAAGCCTTCAGTGATGGGATCACCTCAGTCAAGAACTCCTGGTTCAAGATTTTGCAGGACTATGTTGAA
CATCAGGTTGATGATGAGATGATGTCTGCAGCCTCCCAGAAGTTTCCCTTCAATACTCCCAAAACTAAGG
AAGGCTACTTCTACCGTCAGATCTTTGAACGCCATTACCCAGGCCGGGCTGATTGGCTGACTCATTATTG
GATGCCTAAGTGGATCAATGCTACTGACCCTTCTGCCCGCACTCTGACCCATTATAAGTCAGCTGCCAAA
GCTTAG

Translation (561 aa):
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQPIRVRKYPYL
WLCYNGEIYNHKALQQRFEFEYQTNVDGEIILHLYDKGGIEKTICMLDGVFAFILLDTANKKVFLGRDTY
GVRPLFKAMTEDGFLAVCSEAKGLVSLKHSTTPFLKVEPFLPGHYEVLDLKPNGKVASVEMVKYHHCTDE
PLHAIYDSVEKLFPGFDLETVKNNLRILFDNAIKKRLMTDRRIGCLLSGGLDSSLVAASLLKQLKEAQVQ
YPLQTFAIGMEDSPDLLAARKVANYIGSEHHEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISK
YIRKNTDSVVIFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLKELYLFDVLRADRTTAAHGLELRVPF
LDHRFSSYYLSLPPDMRIPKNGIEKHLLRETFEDCNLLPKEILWRPKEAFSDGITSVKNSWFKILQDYVE
HQVDDEMMSAASQKFPFNTPKTKEGYFYRQIFERHYPGRADWLTHYWMPKWINATDPSARTLTHYKSAAK
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH