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Report for CCDS19767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19767.1 Public Mus musculus 5 Ephb4 23 108 98 CCDS HistoryNCBI Gene:13846Re-query CCDS DB by CCDS ID:19767.1Re-query CCDS DB by GeneID:13846See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061244.14 ENSMUSP00000051622.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061244.14Link to Ensembl Protein Viewer:ENSMUSP00000051622.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061244Re-query CCDS DB by Protein ID:ENSMUSP00000051622
Original member Current member EBI ENSMUST00000144296.7 ENSMUSP00000115731.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144296.7Link to Ensembl Protein Viewer:ENSMUSP00000115731.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144296Re-query CCDS DB by Protein ID:ENSMUSP00000115731
Original member Current member EBI ENSMUST00000166239.7 ENSMUSP00000130275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166239.7Link to Ensembl Protein Viewer:ENSMUSP00000130275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166239Re-query CCDS DB by Protein ID:ENSMUSP00000130275
Original member Current member NCBI NM_010144.6 NP_034274.4 Accepted alive Link to Nucleotide Sequence:NM_010144.6Link to Protein Sequence:NP_034274.4Re-query CCDS DB by Nucleotide ID:NM_010144Re-query CCDS DB by Protein ID:NP_034274Link to BLAST:NP_034274.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034274.4 987 P54761 987 100% 0 0

Chromosomal Locations for CCDS 19767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137350598 137350649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137354089 137354159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137354280 137354567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137357542 137357938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137360365 137360520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137361134 137361466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137362390 137362514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137363159 137363324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137364948 137365050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137365453 137365517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137365624 137365737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137366541 137366788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137369713 137369928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137370711 137370860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137372024 137372217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137372385 137372540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137373512 137373641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2964 nt):
ATGGAGCTCCGAGCGCTGCTGTGCTGGGCTTCCCTCGCCACTGCTTTAGAAGAGACCCTGTTGAACACAA
AACTGGAAACGGCGGATCTGAAATGGGTGACTTACCCTCAGGCAGAGGGCCAGTGGGAGGAGCTAAGCGG
CCTGGATGAGGAACAGCACAGCGTCCGCACCTATGAGGTGTGCGACATGAAGCGTCCAGGGGGCCAGGCT
CACTGGCTGCGCACTGGCTGGGTCCCAAGGCGAGGTGCTGTCCACGTGTATGCCACGATACGCTTCACCA
TGATGGAATGCCTGTCCCTGCCGAGGGCCAGTCGCTCCTGCAAGGAGACATTCACTGTCTTCTATTACGA
GAGCGAAGCTGATACGGCCACGGCCCATACGCCCGCCTGGATGGAGAACCCCTACATCAAGGTGGACACA
GTGGCCGCAGAACATCTGACTCGGAAGCGCCCTGGAGCTGAAGCCACAGGGAAAGTTAATATCAAGACGC
TGCGCCTGGGTCCTCTCAGCAAAGCTGGCTTCTACCTGGCTTTCCAGGACCAAGGAGCCTGCATGGCTCT
GCTCTCCCTGCATCTCTTTTACAAGAAGTGCTCCTGGCTGATCACGAACTTGACCTACTTCCCCGAGACG
GTGCCTCGGGAGCTCGTGGTGCCGGTGGCAGGTAGCTGCGTGGCCAACGCGGTCCCTACCGCCAACCCCA
GCCCCAGCCTCTACTGCCGGGAAGATGGTCAATGGGCTGAGCAGCAGGTCACGGGCTGCAGCTGCGCGCC
AGGGTACGAGGCTGCGGAAAGCAACAAAGTATGCAGAGCCTGTGGCCAGGGAACCTTCAAGCCCCAAATA
GGAGACGAGTCCTGCCTGCCATGCCCAGCCAACAGCCACTCGAATAACATTGGGTCTCCTGTCTGCCTGT
GTCGAATTGGGTATTACCGGGCCCGCTCAGACCCCCGGAGTTCACCTTGCACTACCCCACCCTCTGCTCC
AAGAAGCGTGGTTCACCATTTGAATGGTTCCACCCTGCGCCTGGAATGGAGTGCTCCCCTTGAGTCCGGA
GGCCGAGAGGACCTCACTTATGCTGTACGCTGCCGAGAGTGCCGTCCTGGGGGTTCCTGCTTGCCCTGTG
GGGGCGACATGACCTTCGACCCCGGTCCTCGAGACCTGGTTGAGCCCTGGGTGGCAATCCGAGGGCTGCG
TCCTGATGTCACCTATACCTTTGAGGTTGCTGCTTTGAATGGTGTGTCTACCTTAGCCACTGGACCACCT
CCTTTTGAGCCTGTCAATGTCACCACTGACCGTGAGGTGCCTCCTGCAGTGTCTGACATCCGAGTGACTC
GGTCGTCACCCAGCAGCTTGATCCTGTCATGGGCTATCCCCAGAGCACCCAGTGGGGCCGTGCTGGACTA
CGAGGTCAAGTATCATGAGAAGGGCGCAGAGGGCCCCAGCAGTGTTCGTTTCCTGAAGACATCAGAAAAC
CGAGCTGAGCTCCGGGGGCTGAAGCGGGGAGCCAGCTATCTGGTCCAGGTACGCGCACGGTCCGAGGCTG
GCTACGGTCCCTTCGGCCAGGAGCATCACAGTCAGACTCAACTGGATGAGAGCGAGAGCTGGCGGGAGCA
GCTGGCCCTGATTGCAGGCACTGCGGTTGTGGGTGTGGTCCTGGTCCTGGTGGTCGTCATCATTGCAGTT
CTCTGCCTCAGGAAGCAGAGCAATGGGAGGGAAGTTGAGTACTCGGATAAGCATGGGCAGTATCTCATCG
GGCACGGTACCAAGGTCTACATTGATCCTTTTACTTACGAAGACCCTAATGAGGCAGTGAGGGAATTTGC
CAAAGAGATCGATGTCTCCTATGTCAAGATTGAAGAGGTAATTGGTGCAGGTGAGTTCGGCGAGGTGTGC
CGGGGTCGGCTGAAGGCACCAGGGAAAAAGGAGAGCTGTGTGGCCATCAAGACTCTGAAGGGTGGCTACA
CCGAGCGCCAGAGGCGTGAGTTCCTGAGCGAGGCCTCCATCATGGGCCAGTTCGAGCATCCCAACATCAT
CCGCCTCGAGGGCGTGGTCACCAACAGTGTGCCGGTTATGATCCTCACGGAATTCATGGAGAACGGAGCC
CTGGACTCCTTCCTGCGGCTGAACGACGGGCAGTTCACAGTCATCCAGCTGGTGGGCATGCTGAGGGGCA
TCGCCTCGGGCATGCGGTACCTGGCTGAAATGAGCTATGTCCACCGAGACCTGGCTGCTCGGAACATCTT
GGTCAACAGTAACCTGGTCTGCAAGGTGTCCGACTTTGGCCTCTCCAGATTCTTGGAGGAGAACTCCTCT
GATCCCACCTACACAAGTTCCCTGGGAGGCAAGATTCCCATCCGATGGACCGCCCCTGAAGCCATTGCCT
TCAGGAAGTTCACCTCTGCCAGTGATGCCTGGAGCTATGGGATCGTCATGTGGGAGGTCATGTCTTTTGG
GGAACGGCCATACTGGGACATGAGCAACCAGGATGTGATCAATGCCATTGAACAGGACTACCGGCTGCCT
CCTCCTCCAGACTGCCCCACCTCCCTCCACCAGCTCATGCTGGATTGTTGGCAGAAGGACCGGAATGCCC
GGCCCCGCTTTCCCCAGGTGGTCAGCGCTCTGGACAAGATGATCCGGAATCCCGCTAGCCTCAAAATCGT
GGCCAGGGAGAATGGCGGGGCCTCACATCCACTCTTGGACCAACGGCAGCCTCACTATTCTGCTTTCGGT
TCTGTGGGCGAGTGGCTTCGAGCCATCAAGATGGGAAGATACGAGGAAAGTTTTGCAGCGGCTGGATTCG
GCTCCTTTGAGGTGGTCAGTCAGATCTCTGCCGAGGACCTTCTCCGAATTGGAGTCACTCTGGCAGGACA
CCAGAAGAAAATCTTGGCCAGTGTGCAGCATATGAAGTCCCAAGCTAAGCCAGGAGCCCCTGGTGGGACA
GGGGGACCAGCCCAGCAGTTCTGA

Translation (987 aa):
MELRALLCWASLATALEETLLNTKLETADLKWVTYPQAEGQWEELSGLDEEQHSVRTYEVCDMKRPGGQA
HWLRTGWVPRRGAVHVYATIRFTMMECLSLPRASRSCKETFTVFYYESEADTATAHTPAWMENPYIKVDT
VAAEHLTRKRPGAEATGKVNIKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFYKKCSWLITNLTYFPET
VPRELVVPVAGSCVANAVPTANPSPSLYCREDGQWAEQQVTGCSCAPGYEAAESNKVCRACGQGTFKPQI
GDESCLPCPANSHSNNIGSPVCLCRIGYYRARSDPRSSPCTTPPSAPRSVVHHLNGSTLRLEWSAPLESG
GREDLTYAVRCRECRPGGSCLPCGGDMTFDPGPRDLVEPWVAIRGLRPDVTYTFEVAALNGVSTLATGPP
PFEPVNVTTDREVPPAVSDIRVTRSSPSSLILSWAIPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSEN
RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDESESWREQLALIAGTAVVGVVLVLVVVIIAV
LCLRKQSNGREVEYSDKHGQYLIGHGTKVYIDPFTYEDPNEAVREFAKEIDVSYVKIEEVIGAGEFGEVC
RGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSVPVMILTEFMENGA
LDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSS
DPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLP
PPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQRQPHYSAFG
SVGEWLRAIKMGRYEESFAAAGFGSFEVVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAKPGAPGGT
GGPAQQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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