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Report for CCDS19681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19681.1 Public Mus musculus 5 Ccdc92 23 108 98 CCDS HistoryNCBI Gene:215707Re-query CCDS DB by CCDS ID:19681.1Re-query CCDS DB by GeneID:215707See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036206.13 ENSMUSP00000038075.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036206.13Link to Ensembl Protein Viewer:ENSMUSP00000038075.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036206Re-query CCDS DB by Protein ID:ENSMUSP00000038075
Original member NCBI NM_144819.2 NP_659068.1 Updated not alive Link to Nucleotide Sequence:NM_144819.2Link to Protein Sequence:NP_659068.1Re-query CCDS DB by Nucleotide ID:NM_144819Re-query CCDS DB by Protein ID:NP_659068
Current member NCBI NM_144819.3 NP_659068.1 Accepted alive Link to Nucleotide Sequence:NM_144819.3Link to Protein Sequence:NP_659068.1Re-query CCDS DB by Nucleotide ID:NM_144819Re-query CCDS DB by Protein ID:NP_659068Link to BLAST:NP_659068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659068.1 314 Q8VDN4 314 100% 0 0

Chromosomal Locations for CCDS 19681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124835519 124836291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124838943 124838984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124839661 124839790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCAGCCACAAACCTGGAGAACCAGCTGCACAGTGCACAGAAGAACCTGCTCTTCCTCCAGCGGGAGC
ACGCCAGCACACTCAAGGGGCTGCACGCCGAGATCCGGCGGCTGCAGCAGCACTGCACAGATCTAACATA
TGAGCTGACACTCAAAAGTTTCGAACTGACAGGAGACAGCTCTTCCAGAACGACGGAGCTGAAGAGGCGC
TGTGAGGAGCTGGAAGCCCAGCTGAAGGCCAAAGAGGAGGAAAACCGCAAGCTGCTGCAGGAACTGGAAC
AGAAGAACGCCGCCATCGCTGTGCTGGAGAACACAGTCCGTGAGAGAGAGAAGAAGTACCTGGAGGAGCT
GAAGGTGAAGAGCCACAAACTGAGCATGCTGTCAGGTGAGTTGGAGCAACGCGCCAGCACTGTGGCCTAC
CTCACCTCGCAGCTGCATGCAGCCAAGAAGAAGTTGCTGAGCTCAAGTGGCACCTCGGATGCCAGCCCTG
CCGGCAGTCCCGCGCTGGCCAGCTACAAACCCACACCCCCCAAGGACAAGCTGCCTGAGACACCCCGCCG
CCGCATGAAGAAGAGCCTGTCCGCCCCACTGCACCCCGAGTTTGAGGAGGTCTACAGGTTTGGAGCCGAG
AGCCGCAAACTCCTCCTTCGGGAGCCTGTGGATGCCATGCCCGACCCCACCCCATTCCTGCTGGCCCGGG
AGTCTGCTGAGGTCCAGCTCAAGGAGCGGCCTCTCGTCATCCCTCCCATTGCCTCAGATCGTAGCGCCAC
TGGGCAGCACAGCCCAGCCCGAGATAAGCCACACAAGACGCATGTTGGGGTGGCTCACCGCATTCATCAT
GCCACTCCATCACAGGCCCAGCCTGAGGGAGAGATGAGGGCCGTGGACCAGGTGAATGCAAGCAAGGTGG
TGCGGAAGCACTCAGGGACAGACCGAACTGTGTGA

Translation (314 aa):
MAATNLENQLHSAQKNLLFLQREHASTLKGLHAEIRRLQQHCTDLTYELTLKSFELTGDSSSRTTELKRR
CEELEAQLKAKEEENRKLLQELEQKNAAIAVLENTVREREKKYLEELKVKSHKLSMLSGELEQRASTVAY
LTSQLHAAKKKLLSSSGTSDASPAGSPALASYKPTPPKDKLPETPRRRMKKSLSAPLHPEFEEVYRFGAE
SRKLLLREPVDAMPDPTPFLLARESAEVQLKERPLVIPPIASDRSATGQHSPARDKPHKTHVGVAHRIHH
ATPSQAQPEGEMRAVDQVNASKVVRKHSGTDRTV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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