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Report for CCDS19656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19656.1 Public Mus musculus 5 Rnf34 23 108 98 CCDS HistoryNCBI Gene:80751Re-query CCDS DB by CCDS ID:19656.1Re-query CCDS DB by GeneID:80751See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031434.7 ENSMUSP00000031434.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031434.7Link to Ensembl Protein Viewer:ENSMUSP00000031434.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031434Re-query CCDS DB by Protein ID:ENSMUSP00000031434
Original member NCBI NM_030564.1 NP_085041.1 Updated not alive Link to Nucleotide Sequence:NM_030564.1Link to Protein Sequence:NP_085041.1Re-query CCDS DB by Nucleotide ID:NM_030564Re-query CCDS DB by Protein ID:NP_085041
Current member NCBI NM_030564.2 NP_085041.1 Accepted alive Link to Nucleotide Sequence:NM_030564.2Link to Protein Sequence:NP_085041.1Re-query CCDS DB by Nucleotide ID:NM_030564Re-query CCDS DB by Protein ID:NP_085041Link to BLAST:NP_085041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085041.1 376 Q99KR6 376 100% 0 0

Chromosomal Locations for CCDS 19656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122850293 122850298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122861689 122861907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122863987 122864394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122866802 122866906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122867120 122867321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122868037 122868227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGAAGGCGGGTGCTACTTCTATGTGGGCTTCATGCTGTGGGCTGCTGAATGAAGTCATGGGAACTGGAG
CTGTCCGAGGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAGATTTACACCGAGCTCTGACTT
CCCCACCTACCCACCAGCAGCTACTGAAGGACCCAATATAGTTTGCAAAGCCTGTGGGCTTTCGTTTTCA
GTCTTTAGAAAGAAGCATGTCTGCTGTGACTGCAAGAAGGATTTCTGCTCCCTCTGCTCAGTCTCCCAAG
AAAACCTCCGCAGATGTTCTACTTGTCACCTACTACAAGAGACGGCCTTCCAGCGCCCTCAGTTGATGCG
ACTAAAAGTGAAGGACCTGCGGCAGTATCTCCTCCTCAGAAACATACCAACCGACACTTGTCGTGAGAAG
GAAGACTTGGTGGATCTAGTACTGTGCCACCGTGGACTAGGCTCAGGGGATGACCTGGACTCAAGTAGCC
TGAATTCCTCAAGGTCCCAGACTTCTAGTTTTTTTACACAGTCCCTCTTTTCAAATTACACTCCTCCCTC
TGCTACTGTGTCCTCCTTCCAGGGAGAGCTCATGGACAGAGATGGCGCCTTCAGATCAGAAGTCCTGGCA
CAGGTACAAAGTGAAATAGCTTCAGCAAACACAGATGATGATGACGACGACGATGATGATGACGACGATG
ATGAAGATGACGACGACGAACAAGAGGAGGAGGAACAGAACCCGGGGCTCTCTAAAAAGAAAGCAAGAGC
TTCCCTGTCTGACCTCTCAAGCCTTGAAGAGGTAGAAGGGATGAGTGTGCGCCAGCTGAAGGAGATCCTG
GCTCGGAATTTTGTCAACTATTCTGGCTGTTGTGAAAAATGGGAGCTGGTAGAGAAAGTCAACCGGCTGT
ACAAAGAGAATGAAGAAAACCAAAAGTCATATGGTGAGCGGATGCAACTTCAGGATGAGGAAGATGACAG
CCTGTGCCGAATCTGCATGGATGCGGTCATTGACTGTGTCCTGCTGGAGTGCGGGCACATGGTCACCTGC
ACCAAGTGTGGCAAGCGAATGAGTGAGTGTCCCATCTGCAGGCAGTATGTGGTTCGAGCTGTGCATGTTT
TTAAGTCATGA

Translation (376 aa):
MKAGATSMWASCCGLLNEVMGTGAVRGQQAGFPGSTGPFRFTPSSDFPTYPPAATEGPNIVCKACGLSFS
VFRKKHVCCDCKKDFCSLCSVSQENLRRCSTCHLLQETAFQRPQLMRLKVKDLRQYLLLRNIPTDTCREK
EDLVDLVLCHRGLGSGDDLDSSSLNSSRSQTSSFFTQSLFSNYTPPSATVSSFQGELMDRDGAFRSEVLA
QVQSEIASANTDDDDDDDDDDDDDEDDDDEQEEEEQNPGLSKKKARASLSDLSSLEEVEGMSVRQLKEIL
ARNFVNYSGCCEKWELVEKVNRLYKENEENQKSYGERMQLQDEEDDSLCRICMDAVIDCVLLECGHMVTC
TKCGKRMSECPICRQYVVRAVHVFKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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