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Report for CCDS19611.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19611.2 Public Mus musculus 5 Rnft2 23 108 98 CCDS HistoryNCBI Gene:269695Re-query CCDS DB by CCDS ID:19611.2Re-query CCDS DB by GeneID:269695See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19611.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117177.7 ENSMUSP00000112903.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117177.7Link to Ensembl Protein Viewer:ENSMUSP00000112903.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117177Re-query CCDS DB by Protein ID:ENSMUSP00000112903
Original member Current member NCBI NM_172998.3 NP_766586.2 Accepted alive Link to Nucleotide Sequence:NM_172998.3Link to Protein Sequence:NP_766586.2Re-query CCDS DB by Nucleotide ID:NM_172998Re-query CCDS DB by Protein ID:NP_766586Link to BLAST:NP_766586.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766586.2 446 Q3UF64-2 446 100% 0 0

Chromosomal Locations for CCDS 19611.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 118193532 118193666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118201148 118201249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118201366 118201431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118202774 118202923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118228784 118228937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118232402 118232502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118234141 118234217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118237127 118237599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118242458 118242516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118242850 118242873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGTGGCTCCTTGCTGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACA
TTCCACCTGAAAGCAGAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCGTGGATGAGGGTGGTGTATT
TGAGAGTCTGAAGGCAGAGACGGCCTCCCCTCCTGCGCTCTTCTCAGGCCTGGCAGGTGGCCTGCCTGCC
AGCCCCTTCCCAGCAGGCCTGGTGCTGGGCTCCACGGCGGGTGGCGGGGATGTCTTCATCCCCATGCCAG
CCACCAGGGATGAGGCCGGTGGCCGCAGCGCCGAAGGAAGCACCTACCACCACCGCCAGGCCCACCACCA
CTTCCACCATGGTGCCCACCGCGGGGGCTCCCTGCTGCAGCACGTGGGTGGGGACCACCGTGGACACTCA
GAGGAAGGGGTCGACGAGCAGCCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAAGGCTGTGATCTCCT
GGCTTCAGAAAGGACTGCCCTTTATCCTCATCCTGCTGGCCAAACTGTGCTTCCAGCACAAGCTGGGCAT
TGCTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGGTGTCCTTG
AAGGAGAAGAGGTCGGTTCTGGTCATCTTGTGGATTCTGGCCTTCCTGGCAGGGAATACCATGTACGTCC
TTTATACCTTCAGCTCCCAGCAGCTCTACAGCAGCCTCATATTCCTGAAGCCCAACCTGGAGACACTGGA
CTTCTTTGACCTGCTGTGGATCGTGGGGATCGCCGACTTTGTACTGAAGTACATCACCATCGCCCTCAAG
TGCCTCATCGTGGCCCTGCCCAAGATCATCCTGGCTGTCAAATCCAAGGGAAAGTTTTATCTGGTCATTG
AGGAGCTGAGCCAGCTGTTCAGGTCTCTTGTCCCCATCCAGCTGTGGTACAAGTACATCATGGGGGACGA
CTCCTCCAACAGCTACTTCCTGGGAGGAGTCCTGATCGTCCTCTACAGTCTCTGCAAGTCGTTCGACATC
TGTGGTCGCGTGGGCGGACTCAGGAAAGCATTGAAGCTCCTTTGCACCTCACAGAATTACGGGGTCCGAG
CCACAGGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCAT
GATTCTCCTGTGCCAGCACGTGTTCTGTGAAGAGTGCCTCTGCCTGTGGCTGGACAGGGAACGCACCTGC
CCGCTCTGCCGCTCGGTTGCTGTGGATACCCTGCGATGCTGGAAGGACGGGGCCACGTCTGCACACTTGC
AGGTGTATTGA

Translation (446 aa):
MWLLAAHQVLRKMQRRHSSNTDNIPPESRSRSQALSPEASVDEGGVFESLKAETASPPALFSGLAGGLPA
SPFPAGLVLGSTAGGGDVFIPMPATRDEAGGRSAEGSTYHHRQAHHHFHHGAHRGGSLLQHVGGDHRGHS
EEGVDEQPGTPAPALSELKAVISWLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANSTLREQVSL
KEKRSVLVILWILAFLAGNTMYVLYTFSSQQLYSSLIFLKPNLETLDFFDLLWIVGIADFVLKYITIALK
CLIVALPKIILAVKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDI
CGRVGGLRKALKLLCTSQNYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRERTC
PLCRSVAVDTLRCWKDGATSAHLQVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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