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Report for CCDS19404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19404.1 Public Mus musculus 5 Grsf1 23 108 98 CCDS HistoryNCBI Gene:231413Re-query CCDS DB by CCDS ID:19404.1Re-query CCDS DB by GeneID:231413See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078945.11 ENSMUSP00000077972.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078945.11Link to Ensembl Protein Viewer:ENSMUSP00000077972.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078945Re-query CCDS DB by Protein ID:ENSMUSP00000077972
Original member Current member NCBI NM_178700.5 NP_848815.2 Accepted alive Link to Nucleotide Sequence:NM_178700.5Link to Protein Sequence:NP_848815.2Re-query CCDS DB by Nucleotide ID:NM_178700Re-query CCDS DB by Protein ID:NP_848815Link to BLAST:NP_848815.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848815.2 479 Q8C5Q4 479 100% 0 0

Chromosomal Locations for CCDS 19404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88662561 88662610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88663120 88663255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88664064 88664185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88665757 88665941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88670176 88670311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88671162 88671305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88672605 88672760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88673693 88673849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88675758 88676111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCCGGGACGCGCTGGGTGCTAGGCGCGTTGCTCCGGGGCTGCGGCTGCAACTGCAGCAGCTGCCGGC
GGACCGGCGCCGCCTGCCTGCCTTTCTACTCCGCCGCCGGCACCTTCCCGTCGGGCGTCTCTGGCCGCCG
CCGCCTGCTGCTACTCCTCGGGGCCGCCGCGGCCGCCGCTTCGCAGACGCGGGGCCTGCAGCTCGGGCCT
GCGGCCGCCGGGAGGCTGGCGGGTCCCATCCCTGCCCGTCCCTCCGCCGCCGCGGCCGCCGCCGCGTCCT
ACTCGGCCCTGCGCGCCCCGCTGTTTCCGCGATCGCTGGCAGCCGCCGCGGGCCCGGCGCGGGGTTACAG
TCAGGAATCCAAAACTACCTACCTGGAAGACCTCCCACCACTGCCTGAGTACGAGTTGAGCCCATCCAAG
CTAGGAGACGAGGTGGATGATGTTTATCTCATTCGAGCTCAGGGGCTGCCGTGGTCCTGCACTGTGGAAG
ATGTTCTTAACTTTTTCTCAGACTGCAGAATCCGAAACAGTGAGAATGGAATACATTTCCTCCTAAATAG
AGATGGGAAACGGAGGGGCGATGCCTTAATAGAGATGGAGTCCGAGCAGGATGTACAGAAGGCCTTAGAA
AAGCACCGGATGTACATGGGGCAGCGGTATGTGGAAGTGTATGAAATAAACAACGAAGATGTGGATGCCT
TAATGAAGAGCCTGCAGGTCAAGCCTTCGCCTGTGCTCAGTGATGGTGTGGTCCGCCTGAGAGGACTTCC
TTACAGCTGCAATGAAAAGGACATTGTGGACTTCTTTGCAGGACTGAACATAGTAGACATTACTTTTGTG
ATGGACTATAGAGGGAGAAGAAAAACGGGGGAAGCCTATGTACAGTTTGAAGAACCAGAAATGGCCAACC
AAGCGCTTCTAAAGCACAGGGAAGAAATTGGTAACCGATACATAGAGATATTTCCAAGCAGAAGGAATGA
AGTTCGAACACATGTTGGATCTCATAAAGGAAAGAAAATGACATCGTCTCCTCCTACTAAATATATAACT
GAACCAGAAGTGGTATTTGAGGAACATGAAGTAAATGAAGATATTCGGCCTATGACGGCTTTTGAGAGTG
ATAAAGAGATAGAATTGCCTAAGGAGATGTCAGAAAAACTTCCAGAGGCTGTCGATTTTGGAACTCTGCC
TTCCCTGCATTTTGTCCACATGAGAGGATTGCCTTTCCAAGCCAATGCCCAAGACATTATAAATTTCTTT
GCTCCCCTGAAGCCTGTGAGAATCACCATGGAATACAGCTCCAGTGGGAAGGCCACTGGAGAAGCTGACG
TGCACTTTGATACCCATGAGGATGCTGTTGCAGCCATGCTCAAGGATCGGTCCCATGTCCAACATAGGTA
TATTGAGCTGTTCCTAAATTCATGTCCTAAAGGAAAATAA

Translation (479 aa):
MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGTFPSGVSGRRRLLLLLGAAAAAASQTRGLQLGP
AAAGRLAGPIPARPSAAAAAAASYSALRAPLFPRSLAAAAGPARGYSQESKTTYLEDLPPLPEYELSPSK
LGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALE
KHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFV
MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYIT
EPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFF
APLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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