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Report for CCDS19330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19330.1 Public Mus musculus 5 Corin 23 108 98 CCDS HistoryNCBI Gene:53419Re-query CCDS DB by CCDS ID:19330.1Re-query CCDS DB by GeneID:53419See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005352.9 ENSMUSP00000005352.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005352.9Link to Ensembl Protein Viewer:ENSMUSP00000005352.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000005352Re-query CCDS DB by Protein ID:ENSMUSP00000005352
Original member NCBI NM_016869.3 NP_058565.2 Updated not alive Link to Nucleotide Sequence:NM_016869.3Link to Protein Sequence:NP_058565.2Re-query CCDS DB by Nucleotide ID:NM_016869Re-query CCDS DB by Protein ID:NP_058565
Current member NCBI NM_016869.4 NP_058565.2 Accepted alive Link to Nucleotide Sequence:NM_016869.4Link to Protein Sequence:NP_058565.2Re-query CCDS DB by Nucleotide ID:NM_016869Re-query CCDS DB by Protein ID:NP_058565Link to BLAST:NP_058565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058565.2 1113 Q9Z319-1 1113 100% 0 0

Chromosomal Locations for CCDS 19330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72301486 72301680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72302791 72302924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72304875 72305146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72316024 72316198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72316342 72316391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72319522 72319635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72329612 72329741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72330811 72330921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72332668 72332781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72338961 72339068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72339841 72339986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72342886 72343117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72353870 72353977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72356876 72356992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72358374 72358484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72360651 72360758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72372098 72372211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72422025 72422209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72435235 72435442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72454306 72454506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72471849 72471990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72503882 72504148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGGGCAGGGTTTCCTTCAGCGTTCGGGTCAGCTCCGTGCGGAGAGCCCGCTGCTCTTGTCCTGGGCGAT
GCTACCTCTCCTGCAGAGTCCCTCCAACCACCGCCCTCCGTGCACTGAACGGTCTTGGCTGCGCGGGGGT
TCCGGGGGAGACTGCAGGTGGAGCCGTCGGACCCGGCCCCTTGGGGACCCGTGGCTTCCTCTCCGGGTCC
AAGTTCCAGGCTCCCGGCAGCTGGAAGGATTGCTTTGGAGCCCCGCCTGCTCCAGACGTCTTGAGAGCAG
ACAGGAGCGTGGGCGAGGGCTGTCCTCAGAAGCTGGTGACTGCTAACTTGCTGCGCTTCCTCCTGCTGGT
GCTCATCCCCTGCATCTGCGCCCTCATCGTGCTGCTGGCCATCCTGCTGTCCTTTGTGGGAACATTAAAA
AGGGTTTATTTCAAATCAAATGACAGTGAACCTTTGGTCACTGATGGGGAAGCTCGAGTGCCTGGTGTTA
TTCCTGTAAATACAGTTTATTATGAGAACACAGGGGCGCCCTCTCTGCCCCCCAGCCAGTCCACTCCAGC
CTGGACACCGAGAGCTCCTTCTCCAGAGGACCAGAGTCACAGGAACACAAGCACCTGCATGAACATCACT
CACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGG
ACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACATATCCTGCTCTT
CGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAGGCATGGTCTTCTACCCTGTAGA
TCTTTCTGTGAGGCTGCAAAAGAAGGATGCGAATCTGTCCTGGGAATGGTGAACTCCTCCTGGCCGGATT
CCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAGCTGCTTCTCACT
GCAGCAGGAACATGGAAAGCAATCACTCTGTGGAGGGGGCGAGAGCTTCCTGTGTACCAGCGGGCTCTGC
GTCCCCAAGAAGCTGCAGTGTAACGGCTATAATGACTGTGATGACTGGAGCGACGAGGCGCATTGCAACT
GCAGCAAGGATCTGTTTCACTGTGGCACAGGCAAGTGCCTCCATTACAGCCTCTTGTGTGATGGGTACGA
TGACTGTGGGGACCTGAGTGACGAGCAAAACTGTGATTGTAATCTCACAAAAGAGCATCGCTGTGGAGAT
GGGCGCTGCATTGCGGCTGAGTGGGTGTGCGATGGGGACCATGACTGTGTGGACAAGTCTGATGAGGTCA
ACTGCTCTTGTCACAGCCAGGGCCTGGTGGAATGCAGAAGTGGACAGTGCATCCCTAGCACCTTCCAGTG
TGATGGGGACGAAGACTGTAAGGATGGGAGTGACGAGGAGAACTGCAGTGACAGTCAGACGCCATGTCCA
GAAGGAGAACAGGGATGCCTTGGCAGTTCCTGCGTCGAATCCTGTGCTGGTAGCTCTCTGTGTGACTCAG
ACAGCAGCCTGAGTAACTGCAGTCAATGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAA
CCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCATCC
CTTTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTC
CAAAGTGTGATGTGAATACAGGACAACGCATCCCGCCTTGCAGACTCCTGTGTGAGCACTCCAAAGAGCG
CTGTGAGTCTGTTCTGGGAATCGTTGGCCTGCAGTGGCCTGAAGACACCGACTGCAATCAATTTCCAGAG
GAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGATGTGGAAGAATGCTCTCCGAGTCACTTCA
AATGCCGCTCGGGACGATGCGTTCTGGGCTCCAGGAGATGTGACGGCCAGGCTGACTGTGACGACGACAG
TGACGAGGAGAACTGTGGTTGTAAAGAGAGAGCTCTTTGGGAATGTCCATTTAATAAGCAATGTCTGAAG
CATACATTAATCTGCGATGGGTTTCCAGATTGTCCAGACAGTATGGATGAAAAAAACTGCTCATTTTGCC
AAGACAATGAGCTGGAATGTGCCAACCATGAGTGTGTGCCGCGTGACCTTTGGTGCGACGGATGGGTCGA
CTGCTCAGACAGTTCTGATGAATGGGGCTGTGTGACCCTCTCTAAAAATGGGAACTCCTCCTCATTGCTG
ACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGTTGAGTCAGCTGG
CCTGCAAGCAGATGGGTTTAGGAGAACCGTCTGTGACCAAGCTGATCCCAGGACAGGAAGGCCAGCAGTG
GCTGAGGTTGTACCCCAACTGGGAGAATCTCAATGGGAGCACCTTGCAGGAGCTGCTGGTATACAGGCAC
TCCTGCCCAAGCAGAAGTGAGATTTCCCTTCTGTGCTCCAAGCAAGACTGTGGCCGCCGCCCTGCTGCCC
GAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCAGTGCTCTCTGCA
GAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCAT
TGCTTTGAAGGGAGAGAAGACGCTGATGTTTGGAAAGTGGTATTTGGCATAAACAACCTGGACCATCCAT
CAGGCTTCATGCAGACCCGCTTTGTGAAGACCATCCTGCTACATCCCCGTTACAGTCGAGCAGTGGTAGA
CTATGATATCAGCGTGGTGGAGCTGAGCGATGATATCAATGAGACAAGCTACGTCAGACCTGTCTGCCTA
CCCAGTCCGGAGGAGTATCTAGAACCAGATACGTACTGCTACATCACAGGCTGGGGCCACATGGGCAATA
AAATGCCCTTTAAGCTGCAGGAGGGAGAGGTCCGCATTATCCCTCTGGAGCAGTGCCAGTCCTATTTTGA
CATGAAGACCATCACCAATCGGATGATCTGTGCTGGCTATGAGTCTGGCACCGTGGACTCCTGCATGGGA
GACAGCGGTGGGCCTCTGGTTTGTGAACGACCCGGAGGACAGTGGACATTATTTGGTTTAACTTCATGGG
GCTCCGTCTGCTTTTCCAAAGTTCTGGGACCTGGAGTGTACAGCAATGTGTCTTACTTTGTGGGCTGGAT
TGAAAGACAAATATATATCCAGACCTTTCTCCAAAAGAAATCCCAAGGATAA

Translation (1113 aa):
MGRVSFSVRVSSVRRARCSCPGRCYLSCRVPPTTALRALNGLGCAGVPGETAGGAVGPGPLGTRGFLSGS
KFQAPGSWKDCFGAPPAPDVLRADRSVGEGCPQKLVTANLLRFLLLVLIPCICALIVLLAILLSFVGTLK
RVYFKSNDSEPLVTDGEARVPGVIPVNTVYYENTGAPSLPPSQSTPAWTPRAPSPEDQSHRNTSTCMNIT
HSQCQILPYHSTLAPLLPIVKNMDMEKFLKFFTYLHRLSCYQHILLFGCSLAFPECVVDGDDRHGLLPCR
SFCEAAKEGCESVLGMVNSSWPDSLRCSQFRDHTETNSSVRKSCFSLQQEHGKQSLCGGGESFLCTSGLC
VPKKLQCNGYNDCDDWSDEAHCNCSKDLFHCGTGKCLHYSLLCDGYDDCGDLSDEQNCDCNLTKEHRCGD
GRCIAAEWVCDGDHDCVDKSDEVNCSCHSQGLVECRSGQCIPSTFQCDGDEDCKDGSDEENCSDSQTPCP
EGEQGCLGSSCVESCAGSSLCDSDSSLSNCSQCEPITLELCMNLPYNHTHYPNYLGHRTQKEASISWESS
LFPALVQTNCYKYLMFFACTILVPKCDVNTGQRIPPCRLLCEHSKERCESVLGIVGLQWPEDTDCNQFPE
ESSDNQTCLLPNEDVEECSPSHFKCRSGRCVLGSRRCDGQADCDDDSDEENCGCKERALWECPFNKQCLK
HTLICDGFPDCPDSMDEKNCSFCQDNELECANHECVPRDLWCDGWVDCSDSSDEWGCVTLSKNGNSSSLL
TVHKSAKEHHVCADGWRETLSQLACKQMGLGEPSVTKLIPGQEGQQWLRLYPNWENLNGSTLQELLVYRH
SCPSRSEISLLCSKQDCGRRPAARMNKRILGGRTSRPGRWPWQCSLQSEPSGHICGCVLIAKKWVLTVAH
CFEGREDADVWKVVFGINNLDHPSGFMQTRFVKTILLHPRYSRAVVDYDISVVELSDDINETSYVRPVCL
PSPEEYLEPDTYCYITGWGHMGNKMPFKLQEGEVRIIPLEQCQSYFDMKTITNRMICAGYESGTVDSCMG
DSGGPLVCERPGGQWTLFGLTSWGSVCFSKVLGPGVYSNVSYFVGWIERQIYIQTFLQKKSQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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