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Report for CCDS19326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19326.1 Public Mus musculus 5 Gabrg1 23 108 98 CCDS HistoryNCBI Gene:14405Re-query CCDS DB by CCDS ID:19326.1Re-query CCDS DB by GeneID:14405See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031119.5 ENSMUSP00000031119.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031119.5Link to Ensembl Protein Viewer:ENSMUSP00000031119.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000031119Re-query CCDS DB by Protein ID:ENSMUSP00000031119
Original member NCBI NM_010252.4 NP_034382.2 Updated not alive Link to Nucleotide Sequence:NM_010252.4Link to Protein Sequence:NP_034382.2Re-query CCDS DB by Nucleotide ID:NM_010252Re-query CCDS DB by Protein ID:NP_034382
Current member NCBI NM_010252.5 NP_034382.2 Accepted alive Link to Nucleotide Sequence:NM_010252.5Link to Protein Sequence:NP_034382.2Re-query CCDS DB by Nucleotide ID:NM_010252Re-query CCDS DB by Protein ID:NP_034382Link to BLAST:NP_034382.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034382.2 465 Q9R0Y8 465 100% 0 0

Chromosomal Locations for CCDS 19326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 70754022 70754291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70774271 70774482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70777118 70777270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70778062 70778199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70780650 70780732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70782246 70782466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70794646 70794713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70815957 70816105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70842116 70842219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGGTTCTGGGAAAGCCTTCCTCTTCTCTCCTTCTCTCCTGTGGAGTCAAACTAGAGGAGTGAGGTTGA
TATTCTTGTTACTAACCCTGCATCTGGGAAACTGTGTCGATAAAGCAGATGATGAAGATGATGAAGATTT
AACTATGAACAAAACATGGGTCTTGGCACCAAAAATTCATGAAGGAGATATCACACAAATCCTCAACTCT
TTGCTTCAAGGTTATGATAACAAACTTCGTCCAGATATAGGCGTGAGACCCACAGTGATTGAAACAGATG
TTTATGTAAACAGCATTGGACCTGTGGATCCCATAAACATGGAGTATACAATAGACATAATTTTTGCCCA
AACCTGGTTTGACAGCCGTTTAAAGTTCAATAGCACCATGAAAGTACTTATGCTCAACAGCAACATGGTG
GGGAAAATTTGGATTCCCGACACTTTCTTCAGGAACTCAAGAAAATCGGATGCACACTGGATAACAACGC
CTAATCGCCTGCTGCGGATTTGGAGTGATGGAAGGGTTCTCTATACTCTTCGATTAACAATTAATGCAGA
GTGCTACCTTCAACTTCATAATTTTCCTATGGATGAACATTCCTGTCCACTGGAATTTTCAAGCTATGGA
TACCCTAAAAATGAAATTGAGTACAAGTGGAAAAAGCCCTCTGTGGAAGTAGCTGATCCTAAGTACTGGA
GATTATATCAGTTTGCATTTGTAGGGTTACGAAATTCTACTGAAATCTCTCACACAATCTCTGGAGATTA
TATTATCATGACTATTTTTTTTGACCTGAGCAGACGGATGGGCTATTTCACGATTCAGACATACATTCCG
TGTATTCTAACAGTGGTTCTTTCCTGGGTGTCTTTTTGGATCAATAAAGATGCAGTACCTGCTAGAACAT
CCCTGGGTATCACTACGGTTTTGACTATGACAACCCTCAGTACAATTGCTAGAAAATCTTTACCTAAGGT
TTCTTACGTGACAGCAATGGATCTCTTTGTCTCTGTGTGTTTCATTTTTGTGTTTGCAGCACTCATGGAA
TACGGAACCTTGCATTATTTTACTAGCAACAATAAAGGAAAAACCACCAGAGGCAGGAAGCTGAAAAACA
AGACTTCGGCTTCCCCAGGTCTCCATGCTGGATCCACTCTCATTCCCATGAACAGCATTTCTTTGCCACA
AGGGGAAGATGATTATGGCTACCAGTGTTTGGAGGGCAAAGACTGTACTAGCTTTTTCTGTTGCTTCGAT
GACTGCAGAACTGGGTCCTGGAGGGAAGGGCGGATACACATACGCATTGCAAAAATTGACTCCTACTCCA
GAATCTTTTTCCCAACAGCTTTTGCCTTGTTCAATCTGGTTTACTGGGTTGGGTATCTATACTTATAA

Translation (465 aa):
MGSGKAFLFSPSLLWSQTRGVRLIFLLLTLHLGNCVDKADDEDDEDLTMNKTWVLAPKIHEGDITQILNS
LLQGYDNKLRPDIGVRPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLKFNSTMKVLMLNSNMV
GKIWIPDTFFRNSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYG
YPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGLRNSTEISHTISGDYIIMTIFFDLSRRMGYFTIQTYIP
CILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALME
YGTLHYFTSNNKGKTTRGRKLKNKTSASPGLHAGSTLIPMNSISLPQGEDDYGYQCLEGKDCTSFFCCFD
DCRTGSWREGRIHIRIAKIDSYSRIFFPTAFALFNLVYWVGYLYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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