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Report for CCDS19300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19300.1 Public Mus musculus 5 Pgm2 23 108 98 CCDS HistoryNCBI Gene:66681Re-query CCDS DB by CCDS ID:19300.1Re-query CCDS DB by GeneID:66681See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087324.6 ENSMUSP00000084582.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087324.6Link to Ensembl Protein Viewer:ENSMUSP00000084582.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087324Re-query CCDS DB by Protein ID:ENSMUSP00000084582
Original member NCBI NM_025700.3 NP_079976.1 Updated not alive Link to Nucleotide Sequence:NM_025700.3Link to Protein Sequence:NP_079976.1Re-query CCDS DB by Nucleotide ID:NM_025700Re-query CCDS DB by Protein ID:NP_079976
Current member NCBI NM_025700.4 NP_079976.1 Accepted alive Link to Nucleotide Sequence:NM_025700.4Link to Protein Sequence:NP_079976.1Re-query CCDS DB by Nucleotide ID:NM_025700Re-query CCDS DB by Protein ID:NP_079976Link to BLAST:NP_079976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079976.1 620 Q7TSV4 620 100% 0 0

Chromosomal Locations for CCDS 19300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64092984 64093088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64096979 64097146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64100947 64101053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64102854 64102938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64103377 64103460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64103714 64103907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64105755 64105944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64106608 64106705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64107669 64107849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64108170 64108263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64110516 64110645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64112008 64112197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64116300 64116433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64127777 64127879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGCGGCGGCGACACCGACAGAGACACCGGCTCCGGAAGGCAGTGGCTTGGGTATGGACGCGCGACTGG
ACCAGGAGACCGCGCAGTGGCTGCGTTGGGACCAGAACCCTTTAACCTCTGAGTCAGTGAAACAGCTCAT
TGCTGGAGGTAATAAAGAAGAGCTGCGGAAATGCTTTGGGGCCCGGATGGAGTTTGGGACAGCTGGCCTT
CGAGCGCCTATGGGAGCAGGGATTTCTCGAATGAATGACCTGACCATCATCCAGACCACACAGGGATTTT
GCAGGTACCTGGAAAAGCAGTTCAGTGACCTGAAGCAGAGGGGCGTGGTGATCAGCTTCGATGCGAGAGC
TCACCCCGCCAGCGGGGGCAGCAGCCGGAGGTTTGCCCGGCTGGCTGCGACTGCATTTATCACCCAGGGT
GTTCCTGTATACCTCTTCTCTGATATAACCCCCACCCCCTTTGTGCCGTACACCGTGTCGCACCTGAAAC
TCTGCGCAGGCATCATGATCACTGCCTCGCACAATCCAAAGCAGGACAATGGCTATAAGGTCTACTGGGA
CAACGGAGCTCAGATCATCTCTCCCCACGATCGCGGCATTTCTCAGGCCATTGAGGAAAATCTAGAGCCC
TGGCCTCAGGCTTGGGAGGAGTCTTTGGTTGACAGTAGTCCCCTTCTTCACAACCCCAGCGCGTCCATCG
GTAATGACTACTTTGAAGACCTTAAAAAATACTGTTTTCACAGAACGGTAAACAAGGAGAGCAAGGTGAA
GTTCGTGCACACCTCTGTCCATGGTGTGGGCCACGAGTTTGTGCAGTTGGCCTTCAAGGCTTTTGACCTT
GCTCCTCCCGAAGCTGTTCCCCAACAGAAAGATCCGGATCCCGAGTTTCCAACTGTCAAATACCCGAATC
CTGAGGAGGGCAAAGGTGTCTTGACTTTATCTTTTGCCTTGGCTGACAAAATCAAGGCCAAAATCGTCCT
AGCCAATGACCCAGATGCTGACAGGCTCGCTGTGGCTGAGAAGCAAGACAGTGGTGAGTGGAGAGTGTTC
TCAGGCAATGAGCTGGGGGCCCTGCTGGGATGGTGGCTCTTCACTTCCTGGAAAGAAAAGAACCAAGATC
AAAGTAACCTCAAAGACACATACATGCTGTCCAGCACTGTTTCCTCCAAAATCTTGCGGGCCATAGCCCT
GAAGGAAGGCTTTCATTTCGAGGAAACATTAACCGGCTTCAAGTGGATGGGAAACAGAGCCCAACAGCTC
GGAGACCAGGGGAAAACAGTCCTATTTGCATTTGAAGAAGCTATCGGATACATGTGCTGTCCCTTTGTTC
TGGACAAAGATGGCGTCAGTGCTGCTGTTATTTGTGCAGAGCTGGCGAGCTTTCTAGCAACGAAGAATTT
GTCTTTATCTCAGCAGCTAAATGCCATCTATGTGGAGTACGGCTATCATATTACCACAGCTTCATATTTT
ATCTGCCATGATCAGGGCACAATTCAAAACTTATTTGGAAACCTGAGAAACTATGACGGGAAGAATAATT
ATCCCAAAATGTGTGGCAAGTTTGAAATCTCTGCTATCAGGGACCTTACAACTGGCTATGATGATAGCCA
GCCTGACAAGAAAGCTGTTCTTCCTACCAGTAAGAGCAGCCAAATGATCACCTTCACCTTTGCTAATGGA
GGTGTGGCCACCATGCGGACCAGTGGGACTGAGCCCAAAATCAAGTACTACGCAGAGTTGTGTGCTCCCC
CTGGCAACAGTGATCCGGAGCATCTGAAAAAGGAACTGGATGAGTTAGTCGGTGCCATTGAAGAACATTT
TTTCCAGCCACAAAAATATAACCTACAGCCAAAAGCAGAATAA

Translation (620 aa):
MAAATPTETPAPEGSGLGMDARLDQETAQWLRWDQNPLTSESVKQLIAGGNKEELRKCFGARMEFGTAGL
RAPMGAGISRMNDLTIIQTTQGFCRYLEKQFSDLKQRGVVISFDARAHPASGGSSRRFARLAATAFITQG
VPVYLFSDITPTPFVPYTVSHLKLCAGIMITASHNPKQDNGYKVYWDNGAQIISPHDRGISQAIEENLEP
WPQAWEESLVDSSPLLHNPSASIGNDYFEDLKKYCFHRTVNKESKVKFVHTSVHGVGHEFVQLAFKAFDL
APPEAVPQQKDPDPEFPTVKYPNPEEGKGVLTLSFALADKIKAKIVLANDPDADRLAVAEKQDSGEWRVF
SGNELGALLGWWLFTSWKEKNQDQSNLKDTYMLSSTVSSKILRAIALKEGFHFEETLTGFKWMGNRAQQL
GDQGKTVLFAFEEAIGYMCCPFVLDKDGVSAAVICAELASFLATKNLSLSQQLNAIYVEYGYHITTASYF
ICHDQGTIQNLFGNLRNYDGKNNYPKMCGKFEISAIRDLTTGYDDSQPDKKAVLPTSKSSQMITFTFANG
GVATMRTSGTEPKIKYYAELCAPPGNSDPEHLKKELDELVGAIEEHFFQPQKYNLQPKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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