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Report for CCDS19066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19066.1 Public Mus musculus 5 Gatad1 23 108 98 CCDS HistoryNCBI Gene:67210Re-query CCDS DB by CCDS ID:19066.1Re-query CCDS DB by GeneID:67210See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007559.14 ENSMUSP00000007559.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007559.14Link to Ensembl Protein Viewer:ENSMUSP00000007559.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007559Re-query CCDS DB by Protein ID:ENSMUSP00000007559
Original member Current member NCBI NM_026033.2 NP_080309.2 Accepted alive Link to Nucleotide Sequence:NM_026033.2Link to Protein Sequence:NP_080309.2Re-query CCDS DB by Nucleotide ID:NM_026033Re-query CCDS DB by Protein ID:NP_080309Link to BLAST:NP_080309.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080309.2 266 Q920S3-1 266 100% 0 0

Chromosomal Locations for CCDS 19066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3641390 3641580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3643558 3643741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3644881 3644940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3646784 3646909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3647380 3647619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGCCGCTGGGCCTGAAGCCCACCTGCAGCATGTGCAAGACTACGTCGTCCTCCATGTGGAAGAAGAGTC
CACAGGGCGAGATCCTCTGCCATCACTGCACGGGCCGGGGCGGCGGCGGCGCGGGAGTGGCGGGCGGGAC
CGGGGGCGGTGGCGGCGGCGGCGGTGGCTTCGGCACCACCACCTTCGCCACCACCTCGGCCGGTCCTTCG
CAGAGCAACGGGGGCGGCGGCGGCAAGCAGAGTAAGCAAGAAATTCACAGAAGGTCGGCCCGGCTCAGAA
ATACCAAATACAAATCGGCTCCAGCTGCTGAAAAGAAAGTTTCCACGAAAGGAAAAGGGAGAAGACATAT
TTTTAAGTTAAAAAATCCTATCAAAGCGCCTGAATCTGTTTCTACCATAGTCACTGCAGAGTCAATCTTC
TACAAGGGAGTATATTACCAAATTGGTGACGTTGTTTCTGTGATTGATGAGCAAGATGGGAAGCCGTACT
ATGCTCAGATCAGGGGCTTTATTCAGGACCAGTACTGTGAGAAGAGTGCCGCGCTGACATGGCTCATTCC
TACCCTCGCCAGTCCCAGAGACCAGTTTGATCCTGCATCATATATAATAGGGCCAGAGGAAGATCTTCCA
AGGAAGATGGAGTACCTGGAATTTGTCTGCCACGCGCCTTCTGAGTATTTCAAGTCAAGGTCCTCACCAT
TTCCCACGGTTCCCACCCGACCGGAGAAGGGCTACATATGGACTCACGTTGGACCTACTCCTGCGATAAC
TATTAAGGAAACAGTTGCCAACCACTTGTAG

Translation (266 aa):
MPLGLKPTCSMCKTTSSSMWKKSPQGEILCHHCTGRGGGGAGVAGGTGGGGGGGGGFGTTTFATTSAGPS
QSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHIFKLKNPIKAPESVSTIVTAESIF
YKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEKSAALTWLIPTLASPRDQFDPASYIIGPEEDLP
RKMEYLEFVCHAPSEYFKSRSSPFPTVPTRPEKGYIWTHVGPTPAITIKETVANHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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