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Report for CCDS18966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18966.1 Public Mus musculus 4 Spsb1 23 108 98 CCDS HistoryNCBI Gene:74646Re-query CCDS DB by CCDS ID:18966.1Re-query CCDS DB by GeneID:74646See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038562.8 ENSMUSP00000048969.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038562.8Link to Ensembl Protein Viewer:ENSMUSP00000048969.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000038562Re-query CCDS DB by Protein ID:ENSMUSP00000048969
Original member Current member EBI ENSMUST00000105684.1 ENSMUSP00000101309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105684.1Link to Ensembl Protein Viewer:ENSMUSP00000101309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105684Re-query CCDS DB by Protein ID:ENSMUSP00000101309
Original member Current member EBI ENSMUST00000105685.1 ENSMUSP00000101310.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105685.1Link to Ensembl Protein Viewer:ENSMUSP00000101310.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105685Re-query CCDS DB by Protein ID:ENSMUSP00000101310
Original member NCBI NM_029035.2 NP_083311.1 Updated not alive Link to Nucleotide Sequence:NM_029035.2Link to Protein Sequence:NP_083311.1Re-query CCDS DB by Nucleotide ID:NM_029035Re-query CCDS DB by Protein ID:NP_083311
Current member NCBI NM_029035.3 NP_083311.1 Accepted alive Link to Nucleotide Sequence:NM_029035.3Link to Protein Sequence:NP_083311.1Re-query CCDS DB by Nucleotide ID:NM_029035Re-query CCDS DB by Protein ID:NP_083311Link to BLAST:NP_083311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083311.1 273 Q9D5L7-1 273 100% 0 0

Chromosomal Locations for CCDS 18966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149898214 149898341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149906416 149907109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGGTCAGAAGGTCACAGGAGGGATCAAGACTGTGGACATGCGGGACCCCACATACCGACCTCTGAAGC
AGGAACTCCAGGGGCTGGATTACTGCAAGCCCACCCGGCTGGACCTGCTGCTCGACATGCCCCCTGTGTC
CTACGATGTGCAGCTGCTCCACTCCTGGAACAATAACGACCGTTCGCTCAACGTCTTCGTGAAGGAAGAT
GACAAGTTGATCTTTCACCGGCATCCGGTGGCCCAGAGCACGGACGCCATCAGGGGCAAAGTTGGGTACA
CACGTGGACTGCATGTATGGCAGATCACATGGGCCATGAGGCAACGAGGCACGCATGCCGTGGTGGGGGT
GGCCACAGCAGATGCCCCTTTGCACTCCGTTGGGTACACAACCCTTGTAGGAAATAACCATGAATCCTGG
GGCTGGGACCTGGGGCGTAACCGTCTCTACCACGACGGCAAGAACCAGCCAAGTAAAACATACCCAGCCT
TTCTGGAGCCGGACGAGACATTCATTGTCCCTGACTCCTTTCTCGTGGCCCTGGACATGGATGATGGGAC
CTTAAGTTTCATCGTGGATGGACAGTACATGGGAGTGGCTTTCCGGGGACTCAAGGGTAAAAAGCTGTAT
CCTGTAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGCATGCGCTACTTGAACGGACTTGATCCTGAGC
CCCTGCCACTCATGGACCTGTGCCGGCGTTCGGTGCGCCTAGCGCTGGGAAAGGAGCGCCTGGGTGCCAT
CCCCGCTCTGCCGCTACCTGCCTCCCTCAAAGCCTACCTCCTCTACCAGTGA

Translation (273 aa):
MGQKVTGGIKTVDMRDPTYRPLKQELQGLDYCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKED
DKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESW
GWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLY
PVVSAVWGHCEIRMRYLNGLDPEPLPLMDLCRRSVRLALGKERLGAIPALPLPASLKAYLLYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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