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Report for CCDS18858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18858.1 Public Mus musculus 4 Sdhb 23 108 98 CCDS HistoryNCBI Gene:67680Re-query CCDS DB by CCDS ID:18858.1Re-query CCDS DB by GeneID:67680See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010007.8 ENSMUSP00000010007.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010007.8Link to Ensembl Protein Viewer:ENSMUSP00000010007.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000010007Re-query CCDS DB by Protein ID:ENSMUSP00000010007
Original member Current member NCBI NM_023374.4 NP_075863.2 Accepted alive Link to Nucleotide Sequence:NM_023374.4Link to Protein Sequence:NP_075863.2Re-query CCDS DB by Nucleotide ID:NM_023374Re-query CCDS DB by Protein ID:NP_075863Link to BLAST:NP_075863.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075863.2 282 Q9CQA3 282 100% 0 0

Chromosomal Locations for CCDS 18858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140961405 140961476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140966495 140966628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140971137 140971222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140972883 140973019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140973664 140973780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140976115 140976216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140977378 140977500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140979025 140979102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGCGGCGACGGTCGGGGTCTCCTTGAAGCGCGGCTTCCCGGCTGCCGTTCTCGGCAGAGTCGGCCTGC
AGTTTCAGGCCTGTCGAGGGGCACAGACAGCTGCTGCTGCAGCTCCCAGAATCAAAAAATTTGCCATTTA
CCGATGGGACCCAGACAAGACTGGAGATAAACCTCGAATGCAGACGTACGAGGTGGATCTGAATAAGTGC
GGACCTATGGTGTTGGATGCTTTAATCAAGATCAAGAATGAAGTGGATTCTACTTTAACCTTCCGAAGAT
CTTGTAGAGAAGGCATCTGTGGCTCTTGCGCCATGAACATCAACGGAGGCAATACTCTGGCGTGCACACG
CAGGATCGACACGGACCTCAGCAAAGTCTCCAAAATCTACCCTCTTCCACATATGTATGTGATCAAGGAT
CTAGTCCCTGATTTGAGTAACTTCTACGCACAATACAAATCCATTGAGCCTTATCTGAAGAAGAAGGATG
AGTCCCAGGAGGGCAAGCAACAGTATCTGCAGTCCATCGAGGACCGGGAGAAGCTGGACGGGCTGTACGA
GTGCATCCTGTGTGCCTGCTGCAGCACCAGCTGCCCCAGCTACTGGTGGAACGGAGACAAGTACCTGGGG
CCTGCAGTTCTCATGCAGGCCTATCGCTGGATGATCGACTCCAGAGACGACTTCACAGAGGAACGCCTGG
CCAAGCTGCAGGACCCCTTCTCTGTCTACCGCTGCCACACCATCATGAACTGCACACAGACCTGCCCCAA
GGGTCTGAATCCGGGGAAAGCGATTGCGGAAATCAAGAAGATGATGGCGACCTACAAGGAGAAGCGAGCA
TTGGCTTAA

Translation (282 aa):
MAATVGVSLKRGFPAAVLGRVGLQFQACRGAQTAAAAAPRIKKFAIYRWDPDKTGDKPRMQTYEVDLNKC
GPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLSKVSKIYPLPHMYVIKD
LVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLG
PAVLMQAYRWMIDSRDDFTEERLAKLQDPFSVYRCHTIMNCTQTCPKGLNPGKAIAEIKKMMATYKEKRA
LA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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