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Report for CCDS18837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18837.1 Public Mus musculus 4 Tmco4 23 108 98 CCDS HistoryNCBI Gene:77056Re-query CCDS DB by CCDS ID:18837.1Re-query CCDS DB by GeneID:77056See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043042.9 ENSMUSP00000041388.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043042.9Link to Ensembl Protein Viewer:ENSMUSP00000041388.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043042Re-query CCDS DB by Protein ID:ENSMUSP00000041388
Original member Current member EBI ENSMUST00000050949.8 ENSMUSP00000059320.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050949.8Link to Ensembl Protein Viewer:ENSMUSP00000059320.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000050949Re-query CCDS DB by Protein ID:ENSMUSP00000059320
Original member Current member NCBI NM_001305423.1 NP_001292352.1 Accepted alive Link to Nucleotide Sequence:NM_001305423.1Link to Protein Sequence:NP_001292352.1Re-query CCDS DB by Nucleotide ID:NM_001305423Re-query CCDS DB by Protein ID:NP_001292352Link to BLAST:NP_001292352.1
Original member Current member NCBI NM_029857.3 NP_084133.1 Accepted alive Link to Nucleotide Sequence:NM_029857.3Link to Protein Sequence:NP_084133.1Re-query CCDS DB by Nucleotide ID:NM_029857Re-query CCDS DB by Protein ID:NP_084133Link to BLAST:NP_084133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292352.1 631 Q91WU4-1 631 100% 0 0
NP_084133.1 631 Q91WU4-1 631 100% 0 0

Chromosomal Locations for CCDS 18837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138990551 138990720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138996398 138996572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138998024 138998051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139010469 139010601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139019573 139019670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139020046 139020189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139020859 139020978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139021621 139021785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139022931 139023067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139029829 139029913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139052501 139052618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139053900 139054017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139058112 139058516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGCCACATGGAACAGGCCACACCCAAGGCAGCCTGTGGCACCAGAGCCAGCTGCAGAAGACGATTCCC
AGCAGCCCCTGGGCCGGGAGCTCTCGGAGGCCAATCGCTTCGCCTATGCCGCCCTGTGTGGCTTCTCGTT
GTCACAGCTGTTTCCAGAACCTGAACAAAGCTCCTTCTGCACAGAATTTGTGACGGGCCTGGTGAAATGG
CTGCATCTGTCTGAAAGTGTCCTCCCAACCATAATGGCCTTTGCCAGTGGCCTGGGAGGCGAAGGAGCCG
ACATCTTTGCTCAGACTTTATTGCAGGACCCCATTCTGAGAGACAACCCATCAGCAGTCAGTCAGGACCT
CCTGAGCTTCTCACTCAAGAATGGACACTATGATGCCCGGGCCAGAGTCCTCGTTTGTCATGTGACCTCC
CTGCTCCAGGTGCCCATGGAGGAGCTTGACATTCTGGAAGAGGTGTTCCTGGAGAGCCTGAAGGACGCCA
AAGAGGAGGAGTCTGAGACCGCAGAGGCATCCCGGAAGAGGAAAGAAAAACGGAGGAAGTGGAAACGCTA
TCTTCTGATAGGCCTGGCCACAGTTGGAGGCGGGACAGTGATTGGTGTGACTGGGGGGCTAGCTGCCCCA
CTTGTCGCTGCAGGAGCCGCAACCATCATAGGCAGTGCCGGGGCAGCCGCGTTGGGCTCAGTGGCTGGCA
TCGCTGTTATGACTTCACTGTTTGGTGCAGCCGGAGCTGGCCTGACAGGATACAAGATGAAGAAGCGAGT
CGGGGCCATTGAGGAGTTCATGTTCCTGCCTTTGACGGAAGGCCGGCAGCTACATATCACCATTGCCATC
ACTGGCTGGCTCGGGTCCGGCAGATACCGCACATTTAATGCCCCATGGATGGCCCTAGCCCGCAGCCAGG
AGCAGTACTGCCTGGCCTGGGAGGCCAAGTACCTGATGGAGTTGGGCAATGCCCTGGAGACCATCCTCAG
TGGCCTCGCTAACATGGTAGCACAGGAGGCTCTCAAGTACACAGTGCTCTCTGGTATCGTGGCTGCTCTA
ACCTGGCCAGCCTCACTCCTCAGCGTCGCCAATGTCATCGACAACCCCTGGGGCGTGTGCCTCCACCGAT
CGGCAGAAGTTGGCAAGCACCTGGCGCACATCCTTCTCTCACGGCAACAGGGCCGGAGACCTGTCACCTT
GATTGGATTCAGCCTGGGAGCCAGAGTCATCTACTTTTGTCTGCAAGAAATGGCTCAGGAGCAAGATTGC
CAAGGGATCATCGAGGATGTGGTCCTTCTGGGCGCACCAGTAGAAGGGGACCCCAAGCACTGGGAACCAT
TCCGGAATGTGGTGTCTGGGAGAATCATCAATGGCTACTGCAGGGGAGACTGGCTGCTGAGCTTCGTGTA
CCGCACATCTTCCGTGCAGCTCCGCGTCGCCGGCCTCCAGCCTGTGCTGCTGCAGGACCGGAGGATGGAG
AATGTGGACCTGACCTCCGTGGTCAATGGCCACTTGGACTACGCCAAGCAAATGGATGCCATCCTGAAGG
TTGTGGGCATCCGCACCAAGCCTGGCTGGAGAGAGAAGGGACTCCCACTGGCCCCTGGCAGCTTGCCCCA
AGAAGAGCCTCTCCAGACAGCCATAGTCTCTACAGATGAGATAATCCTCCAGGATGGACAAAGCCAGGGA
CCTGCCTCAGAAGACAGTCTCAAAACCACCATACCTTCCAGTGCCAGCCAAGCCCAGATGCCAGCAGGGC
TGAACCAGTCCACAGAGGACTCGCTCTCTACTGCTGCTGCTCCGGCAGAGGGACACCTGATCTGCAGCCA
TGGTGTGGGTCCCAACCCACTGGGCTGCCCTGACTGCACCCATGGGACCCAGGAGTCCTGTACAGAACTG
GACTGA

Translation (631 aa):
MATWNRPHPRQPVAPEPAAEDDSQQPLGRELSEANRFAYAALCGFSLSQLFPEPEQSSFCTEFVTGLVKW
LHLSESVLPTIMAFASGLGGEGADIFAQTLLQDPILRDNPSAVSQDLLSFSLKNGHYDARARVLVCHVTS
LLQVPMEELDILEEVFLESLKDAKEEESETAEASRKRKEKRRKWKRYLLIGLATVGGGTVIGVTGGLAAP
LVAAGAATIIGSAGAAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTEGRQLHITIAI
TGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETILSGLANMVAQEALKYTVLSGIVAAL
TWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQEQDC
QGIIEDVVLLGAPVEGDPKHWEPFRNVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRME
NVDLTSVVNGHLDYAKQMDAILKVVGIRTKPGWREKGLPLAPGSLPQEEPLQTAIVSTDEIILQDGQSQG
PASEDSLKTTIPSSASQAQMPAGLNQSTEDSLSTAAAPAEGHLICSHGVGPNPLGCPDCTHGTQESCTEL
D


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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